File List

Here is a list of all documented files with brief descriptions:

[detail level 123]

▼ src
► Accelerator
card_utilities.h
core_kernel_manager.h
cuda_wrappers.h
gpu_details.h
gpu_enumerators.h
hpc_config.h
hpc_hybrid.h
hpc_hybrid_util.h
hybrid.h
hybrid_util.h
kernel_format.h
mesh_kernel_manager.h
ptx_macros.h
► Chemistry
atom_equivalence.h
atommask.h
chemical_features.h
chemistry_enumerators.h
indigo.h
match_bonding_pattern.h
periodic_table.h
residue_dictionary.h
znumber.h
► Constants
behavior.h
fixed_precision.h
generalized_born.h
hpc_bounds.h
scaling.h
symbol_values.h
► DataTypes
casting_ops.h
common_types.h
mixed_types.h
stormm_vector_types.h
► FileManagement
binary_encoding.h
directory_util.h
file_enumerators.h
file_listing.h
file_util.h
► ForceField
forcefield_element.h
forcefield_enumerators.h
► Math
bspline.h
cluster_manager.h
clustering.h
formulas.h
geodesic.h
hilbert_sfc.h
hpc_reduction.h
juffa.h
log_scale_spline.h
math_enumerators.h
matrix.h
matrix_ops.h
multiplication.h
one_dimensional_splines.h
radial_derivatives.h
reduction.h
reduction_abstracts.h
reduction_bridge.h
reduction_enumerators.h
reduction_workunit.h
rounding.h
series_ops.h
sorting_enumerators.h
statistical_enumerators.h
statistics.h
summation.h
tickcounter.h
tricubic_cell.h
vector_ops.h
► MolecularMechanics
dynamics.h
hpc_dynamics.h
hpc_kinetic.h
hpc_minimization.h
kinetic.h
line_minimization.h
minimization.h
mm_controls.h
mm_enumerators.h
mm_evaluation.h
small_molecule_batch.h
► MoleculeFormat
mdlmol.h
mdlmol_atomlist.h
mdlmol_bond.h
mdlmol_dataitem.h
mdlmol_property.h
mdlmol_refinement.h
mdlmol_request.h
molecule_file_io.h
molecule_format_enumerators.h
molecule_parsing.h
pdb.h
tripos_format.h
► Namelists
command_line_parser.h
input.h
input_transcript.h
namelist_combination.h
namelist_common.h
namelist_element.h
namelist_emulator.h
namelist_enumerators.h
namelist_inventory.h
nml_conformer.h
nml_dynamics.h
nml_ffmorph.h
nml_files.h
nml_mesh.h
nml_minimize.h
nml_nice.h
nml_pppm.h
nml_precision.h
nml_random.h
nml_receptor.h
nml_remd.h
nml_report.h
nml_restraint.h
nml_scene.h
nml_solvent.h
user_settings.h
► Numerics
host_bit_counting.h
numeric_enumerators.h
split_fixed_precision.h
► Parsing
ascii_numbers.h
citation.h
parse.h
parsing_enumerators.h
polynumeric.h
tabulation.h
textfile.h
textguard.h
► Potential
cacheresource.h
cellgrid.h
convolution_manager.h
energy_abstracts.h
energy_enumerators.h
eval_synthesis.h
eval_valence_workunit.h
forward_exclusionmask.h
hpc_map_density.h
hpc_nonbonded_potential.h
hpc_pme_potential.h
hpc_scorecard.h
hpc_valence_potential.h
layered_potential.h
layered_potential_metrics.h
local_exclusionmask.h
map_density.h
nonbonded_potential.h
pme_potential.h
pme_util.h
pmigrid.h
ppitable.h
scorecard.h
soft_core_potentials.h
static_exclusionmask.h
surface_area.h
tile_manager.h
valence_potential.h
► Random
hpc_random.h
random.h
random_enumerators.h
► Reporting
code_dox.h
display.h
error_format.h
help_messages.h
ordered_list.h
present_energy.h
present_field.h
progress_bar.h
render_molecule.h
render_options.h
report_table.h
reporting_enumerators.h
section_contents.h
summary_file.h
watcher.h
► Restraints
bounded_restraint.h
restraint_apparatus.h
restraint_builder.h
restraint_enumerators.h
restraint_util.h
► Structure
background_mesh.h
background_mesh_composition.h
clash_detection.h
global_manipulation.h
hpc_mesh_support.h
hpc_rmsd.h
hpc_virtual_site_handling.h
hub_and_spoke.h
isomerization.h
local_arrangement.h
mesh_forcefield.h
mesh_foundation.h
mesh_mechanics.h
mesh_parameters.h
mesh_rulers.h
radius_gyration.h
rmsd.h
rmsd_plan.h
settle.h
structure_enumerators.h
structure_ops.h
structure_utils.h
virtual_site_handling.h
► Synthesis
atomgraph_synthesis.h
brickwork.h
condensate.h
hpc_phasespace_synthesis.h
implicit_solvent_workspace.h
nonbonded_workunit.h
phasespace_synthesis.h
static_mask_synthesis.h
synthesis_abstracts.h
synthesis_cache_map.h
synthesis_enumerators.h
synthesis_permutor.h
systemcache.h
valence_workunit.h
► Topology
amber_prmtop_util.h
atomgraph.h
atomgraph_abstracts.h
atomgraph_analysis.h
atomgraph_constants.h
atomgraph_enumerators.h
atomgraph_intake.h
atomgraph_refinement.h
atomgraph_stage.h
combograph_ljmodel.h
lennard_jones_analysis.h
topology_limits.h
topology_util.h
► Trajectory
amber_ascii.h
barostat.h
checkpoint.h
coordinate_copy.h
coordinate_graft.h
coordinate_intake.h
coordinate_series.h
coordinate_swap.h
coordinate_swap_plan.h
coordinate_util.h
coordinateframe.h
hpc_coordinate_copy.h
hpc_coordinate_swap.h
hpc_integration.h
hpc_trim.h
integration.h
motion_sweeper.h
phasespace.h
thermostat.h
trajectory_enumerators.h
trim.h
write_annotated_frame.h
write_frame.h
► UnitTesting
approx.h
checklist.h
dissect_textfile.h
file_snapshot.h
stopwatch.h
test_environment.h
test_system_manager.h
unit_test.h
unit_test_enumerators.h
vector_report.h