2#ifndef STORMM_NONBONDED_POTENTIAL_CUH
3#define STORMM_NONBONDED_POTENTIAL_CUH
6#include "Accelerator/core_kernel_manager.h"
7#include "Accelerator/gpu_details.h"
8#include "Constants/behavior.h"
9#include "MolecularMechanics/mm_controls.h"
10#include "Potential/energy_enumerators.h"
11#include "Synthesis/implicit_solvent_workspace.h"
12#include "Synthesis/phasespace_synthesis.h"
13#include "Synthesis/static_mask_synthesis.h"
14#include "Synthesis/synthesis_abstracts.h"
15#include "Synthesis/synthesis_enumerators.h"
16#include "Topology/atomgraph_enumerators.h"
17#include "Trajectory/thermostat.h"
18#include "cacheresource.h"
19#include "energy_enumerators.h"
25using card::GpuDetails;
26using card::CoreKlManager;
27using constants::PrecisionModel;
28using mm::MMControlKit;
29using mm::MolecularMechanicsControls;
30using numerics::AccumulationMethod;
31using synthesis::AtomGraphSynthesis;
32using synthesis::ImplicitSolventWorkspace;
33using synthesis::ISWorkspaceKit;
34using synthesis::NbwuKind;
35using synthesis::PhaseSpaceSynthesis;
36using synthesis::PsSynthesisWriter;
37using synthesis::SeMaskSynthesisReader;
38using synthesis::StaticExclusionMaskSynthesis;
39using synthesis::SyNonbondedKit;
40using synthesis::VwuGoal;
41using topology::ImplicitSolventModel;
42using trajectory::Thermostat;
43using trajectory::ThermostatWriter;
58cudaFuncAttributes queryNonbondedKernelRequirements(PrecisionModel prec, NbwuKind kind,
59 EvaluateForce eval_frc,
60 EvaluateEnergy eval_nrg,
61 AccumulationMethod acc_meth,
62 ImplicitSolventModel igb,
63 ClashResponse collision_handling);
69cudaFuncAttributes queryBornRadiiKernelRequirements(PrecisionModel prec, NbwuKind kind,
70 AccumulationMethod acc_meth,
71 ImplicitSolventModel igb);
77cudaFuncAttributes queryBornDerivativeKernelRequirements(PrecisionModel prec, NbwuKind kind,
78 AccumulationMethod acc_meth,
79 ImplicitSolventModel igb);
129 EvaluateEnergy eval_energy,
const int2 bt,
const int2 gbr_bt,
130 const int2 gbd_bt,
double clash_minimum_distance = 0.0,
131 double clash_ratio = 0.0);
138 EvaluateEnergy eval_energy, AccumulationMethod force_sum,
const int2 bt,
139 const int2 gbr_bt,
const int2 gbd_bt,
float clash_minimum_distance = 0.0f,
140 float clash_ratio = 0.0f);
147 EvaluateEnergy eval_energy, AccumulationMethod force_sum,
148 const CoreKlManager &launcher,
double clash_minimum_distance = 0.0,
149 double clash_ratio = 0.0);
157 double clash_minimum_distance = 0.0,
double clash_ratio = 0.0);
A class to guide the implementation of GPU kernels, with selected thread counts per block and block c...
Definition core_kernel_manager.h:56
An object to hold temporary data for a particular work unit (whether bonded or non-bonded),...
Definition cacheresource.h:63
Track the energy components of a collection of systems in an HPC-capable array. This object uses the ...
Definition scorecard.h:101
A collection of contol data for molecular mechanics simulations, conveying the current step number,...
Definition mm_controls.h:100
A collection of one or more AtomGraph objects, with similar components arranged in contiguous arrays ...
Definition atomgraph_synthesis.h:55
A small collection of arrays to manage temporary accumulators for computing Born radii and their deri...
Definition implicit_solvent_workspace.h:65
A fixed-precision representation of coordinates, velocities, and forces to manage a set of simulation...
Definition phasespace_synthesis.h:325
An exclusion mask object for a compilation of systems. All systems are represented in full detail,...
Definition static_mask_synthesis.h:54
Store the parameters for a simulation thermostat. Includes Berendsen, Andersen, and Langevin methods....
Definition thermostat.h:221
Abstract for the CacheResource object, accessible as a C-style struct and suitable for passing to GPU...
Definition cacheresource.h:17
Writeable abstract for the ScoreCard object, useful for accumulating energies in many kernels.
Definition scorecard.h:64
The C-style, always writeable abstract for the MolecularMechanicsControls object. To not be able to m...
Definition mm_controls.h:52
A simple abstract for the implicit solvent workspace. There are not readers and writers as the only u...
Definition implicit_solvent_workspace.h:23
The writer for a PhaseSpaceSynthesis object, containing all of the data relevant for propagating dyna...
Definition phasespace_synthesis.h:87
The read-only abstract for a static exclusion mask compilation. This provides access in a similar for...
Definition static_mask_synthesis.h:20
Collect the critical non-bonded parameters and masking information for work unit-based evaluation of ...
Definition synthesis_abstracts.h:181
Partially writeable abstract for the Thermostat object. As with the MMControlKit struct (see the libr...
Definition thermostat.h:58