STORMM Source Documentation
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Here is a list of all documented variables with links to the class documentation for each member:
- s -
s_move :
stormm::mm::LinMinReader
,
stormm::mm::LinMinWriter
saltcon :
stormm::energy::ImplicitSolventKit< T >
,
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::mm::ImplicitSolventKit< T >
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::synthesis::ImplicitSolventKit< T >
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::topology::ImplicitSolventKit< T >
,
stormm::trajectory::SyNonbondedKit< T, T2 >
sampled_step_count :
stormm::energy::ScoreCardReader
,
stormm::energy::ScoreCardWriter
,
stormm::mm::ScoreCardWriter
scale :
stormm::review::MeshParamKit
,
stormm::structure::MeshParamKit
scale_bits :
stormm::review::MeshParamKit
,
stormm::stmath::GenericRdSubstrate< T >
,
stormm::structure::MeshParamKit
scale_f :
stormm::review::MeshParamKit
,
stormm::structure::MeshParamKit
scalings :
stormm::energy::TilePlan
scan_begin :
stormm::chemistry::SelectionItem
scan_end :
stormm::chemistry::SelectionItem
scope_name :
stormm::docs::CppScope
scwu_progress :
stormm::energy::MMControlKit< T >
,
stormm::mm::MMControlKit< T >
,
stormm::stmath::MMControlKit< T >
,
stormm::trajectory::MMControlKit< T >
sd_cycles :
stormm::energy::MMControlKit< T >
,
stormm::mm::MMControlKit< T >
,
stormm::stmath::MMControlKit< T >
,
stormm::trajectory::MMControlKit< T >
self_assign :
stormm::energy::TilePlan
self_ecorr :
stormm::energy::ConvolutionKit< T >
self_prep :
stormm::energy::TilePlan
serial_number :
stormm::card::HybridLabel
,
stormm::stmath::HybridLabel
sett_insr :
stormm::energy::SyAtomUpdateKit< T, T2, T4 >
,
stormm::mm::SyAtomUpdateKit< T, T2, T4 >
,
stormm::structure::SyAtomUpdateKit< T, T2, T4 >
,
stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >
,
stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
settle_geom :
stormm::energy::SyAtomUpdateKit< T, T2, T4 >
,
stormm::mm::SyAtomUpdateKit< T, T2, T4 >
,
stormm::structure::SyAtomUpdateKit< T, T2, T4 >
,
stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >
,
stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
settle_group_count :
stormm::topology::ConstraintTable
settle_h1_atoms :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::topology::ConstraintTable
,
stormm::trajectory::ConstraintKit< T >
settle_h2_atoms :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::topology::ConstraintTable
,
stormm::trajectory::ConstraintKit< T >
settle_mass :
stormm::energy::SyAtomUpdateKit< T, T2, T4 >
,
stormm::mm::SyAtomUpdateKit< T, T2, T4 >
,
stormm::structure::SyAtomUpdateKit< T, T2, T4 >
,
stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >
,
stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
settle_mh :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_mhrmt :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_mo :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_moh :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_mormt :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_ox_atoms :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::topology::ConstraintTable
,
stormm::trajectory::ConstraintKit< T >
settle_param_idx :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::topology::ConstraintTable
,
stormm::trajectory::ConstraintKit< T >
settle_parameter_count :
stormm::topology::ConstraintTable
settle_ra :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_rb :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
settle_rc :
stormm::mm::ConstraintKit< T >
,
stormm::structure::ConstraintKit< T >
,
stormm::synthesis::ConstraintKit< T >
,
stormm::topology::ConstraintKit< T >
,
stormm::trajectory::ConstraintKit< T >
shacc_fp_scale :
stormm::energy::PMIGridReader
,
stormm::energy::PMIGridWriter
shake_ext :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
shake_fails :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
short_id :
stormm::trajectory::ValidCoordinateTypes
softcore_lja :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
softcore_ljb :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
softcore_ljc :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
softcore_ljd :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
softcore_lje :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
softcore_ljf :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
softcore_qq :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
sp_cache :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
sp_detail_mask :
stormm::energy::LogSplineTable< T4 >
,
stormm::energy::PPIeKit< T >
,
stormm::energy::PPIKit< T, T4 >
,
stormm::stmath::LogSplineTable< T4 >
sp_inv_masses :
stormm::chemistry::ChemicalDetailsKit
,
stormm::energy::ChemicalDetailsKit
,
stormm::mm::ChemicalDetailsKit
,
stormm::restraints::ChemicalDetailsKit
,
stormm::review::ChemicalDetailsKit
,
stormm::structure::ChemicalDetailsKit
,
stormm::synthesis::ChemicalDetailsKit
,
stormm::topology::ChemicalDetailsKit
,
stormm::trajectory::ChemicalDetailsKit
sp_masses :
stormm::chemistry::ChemicalDetailsKit
,
stormm::energy::ChemicalDetailsKit
,
stormm::mm::ChemicalDetailsKit
,
stormm::restraints::ChemicalDetailsKit
,
stormm::review::ChemicalDetailsKit
,
stormm::structure::ChemicalDetailsKit
,
stormm::synthesis::ChemicalDetailsKit
,
stormm::topology::ChemicalDetailsKit
,
stormm::trajectory::ChemicalDetailsKit
speed_limit :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
speed_stages :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
speed_steps :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
speeds :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
squared_accumulators :
stormm::energy::ScoreCardReader
,
stormm::energy::ScoreCardWriter
,
stormm::mm::ScoreCardWriter
start_line :
stormm::docs::CppScope
start_pos :
stormm::docs::CppScope
state_xy :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
state_zw :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
stencil_kind :
stormm::review::MeshParamKit
,
stormm::structure::MeshParamKit
step :
stormm::energy::MMControlKit< T >
,
stormm::energy::ThermostatWriter< T >
,
stormm::mm::MMControlKit< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::stmath::MMControlKit< T >
,
stormm::trajectory::MMControlKit< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
strategy :
stormm::structure::RMSDPlanReader< T >
stride :
stormm::energy::CellOriginsReader
,
stormm::energy::CellOriginsWriter
sum_deijda :
stormm::energy::ISWorkspaceKit< T >
,
stormm::mm::ISWorkspaceKit< T >
,
stormm::synthesis::ISWorkspaceKit< T >
sum_deijda_ovrf :
stormm::energy::ISWorkspaceKit< T >
,
stormm::mm::ISWorkspaceKit< T >
,
stormm::synthesis::ISWorkspaceKit< T >
supertile_map_bounds :
stormm::energy::SeMaskSynthesisReader
,
stormm::synthesis::SeMaskSynthesisReader
supertile_map_idx :
stormm::energy::SeMaskSynthesisReader
,
stormm::energy::StaticExclusionMaskReader
,
stormm::mm::StaticExclusionMaskReader
,
stormm::structure::StaticExclusionMaskReader
,
stormm::synthesis::SeMaskSynthesisReader
,
stormm::synthesis::StaticExclusionMaskReader
supertile_stride_count :
stormm::energy::StaticExclusionMaskReader
,
stormm::mm::StaticExclusionMaskReader
,
stormm::structure::StaticExclusionMaskReader
,
stormm::synthesis::StaticExclusionMaskReader
surf :
stormm::topology::CmapTerm< T >
surf_dim :
stormm::topology::CmapTerm< T >
surf_idx :
stormm::topology::CmapTerm< T >
symm_atoms :
stormm::structure::RMSDPlanReader< T >
symm_bounds :
stormm::structure::RMSDPlanReader< T >
symm_ranges :
stormm::structure::RMSDPlanReader< T >
sys_offsets :
stormm::energy::ConvolutionKit< T >
system_cell_grids :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
system_cell_invu :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
system_cell_umat :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
system_chain_bounds :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
system_count :
stormm::chemistry::CondensateReader
,
stormm::chemistry::PsSynthesisReader
,
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::energy::ConvolutionKit< T >
,
stormm::energy::PsSynthesisBorders
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::energy::ScoreCardReader
,
stormm::energy::ScoreCardWriter
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::mm::ScoreCardWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::CondensateReader
,
stormm::structure::CondensateWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::CondensateBorders
,
stormm::synthesis::CondensateReader
,
stormm::synthesis::CondensateWriter
,
stormm::synthesis::PsSynthesisBorders
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::synthesis::SyPermutorKit< T >
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CondensateBorders
,
stormm::trajectory::CondensateReader
,
stormm::trajectory::CondensateWriter
,
stormm::trajectory::PsSynthesisBorders
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
system_pmig_invu :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
system_settings :
stormm::synthesis::SyPermutorKit< T >
system_settings_limits :
stormm::synthesis::SyPermutorKit< T >
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