STORMM Source Documentation
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Here is a list of all documented class members with links to the class documentation for each member:
- u -
ubrd_asgn_atoms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
ubrd_asgn_bounds :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
ubrd_asgn_index :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
ubrd_asgn_terms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
ubrd_i_atoms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
ubrd_k_atoms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
ubrd_keq :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
,
stormm::trajectory::SyValenceKit< T >
ubrd_leq :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
,
stormm::trajectory::SyValenceKit< T >
ubrd_param_idx :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
umat :
stormm::chemistry::CondensateReader
,
stormm::chemistry::CoordinateFrameReader
,
stormm::chemistry::CoordinateSeriesReader< T >
,
stormm::chemistry::PhaseSpaceReader
,
stormm::chemistry::PsSynthesisReader
,
stormm::diskutil::CoordinateFrameReader
,
stormm::energy::CoordinateFrameReader
,
stormm::energy::CoordinateFrameWriter
,
stormm::energy::CoordinateSeriesReader< T >
,
stormm::energy::CoordinateSeriesWriter< T >
,
stormm::energy::PhaseSpaceReader
,
stormm::energy::PhaseSpaceWriter
,
stormm::energy::PsSynthesisBorders
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::CoordinateFrameReader
,
stormm::mm::PhaseSpaceReader
,
stormm::mm::PhaseSpaceWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::namelist::CoordinateFrameReader
,
stormm::restraints::CoordinateFrameReader
,
stormm::review::CoordinateFrameReader
,
stormm::review::CoordinateSeriesReader< T >
,
stormm::review::MeshParamKit
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::CondensateReader
,
stormm::structure::CondensateWriter
,
stormm::structure::CoordinateFrameReader
,
stormm::structure::CoordinateFrameWriter
,
stormm::structure::CoordinateSeriesReader< T >
,
stormm::structure::CoordinateSeriesWriter< T >
,
stormm::structure::MeshParamKit
,
stormm::structure::PhaseSpaceReader
,
stormm::structure::PhaseSpaceWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::CondensateReader
,
stormm::synthesis::CondensateWriter
,
stormm::synthesis::CoordinateFrameReader
,
stormm::synthesis::CoordinateFrameWriter
,
stormm::synthesis::CoordinateSeriesReader< T >
,
stormm::synthesis::CoordinateSeriesWriter< T >
,
stormm::synthesis::PhaseSpaceReader
,
stormm::synthesis::PhaseSpaceWriter
,
stormm::synthesis::PsSynthesisBorders
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::CoordinateSeriesWriter< T >
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::CondensateReader
,
stormm::trajectory::CondensateWriter
,
stormm::trajectory::CoordinateFrameReader
,
stormm::trajectory::CoordinateFrameWriter
,
stormm::trajectory::CoordinateSeriesReader< T >
,
stormm::trajectory::CoordinateSeriesWriter< T >
,
stormm::trajectory::PhaseSpaceReader
,
stormm::trajectory::PhaseSpaceWriter
,
stormm::trajectory::PsSynthesisBorders
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
umat_alt :
stormm::chemistry::PhaseSpaceReader
,
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PhaseSpaceReader
,
stormm::energy::PhaseSpaceWriter
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PhaseSpaceReader
,
stormm::mm::PhaseSpaceWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::PhaseSpaceReader
,
stormm::structure::PhaseSpaceWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::PhaseSpaceReader
,
stormm::synthesis::PhaseSpaceWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::PhaseSpaceReader
,
stormm::trajectory::PhaseSpaceWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
uniformRandomNumber() :
stormm::random::Ran2Generator
,
stormm::random::Xoroshiro128pGenerator
,
stormm::random::Xoshiro256ppGenerator
,
stormm::stmath::Ran2Generator
,
stormm::stmath::Xoshiro256ppGenerator
,
stormm::synthesis::Xoshiro256ppGenerator
,
stormm::testing::Xoshiro256ppGenerator
,
stormm::trajectory::Xoshiro256ppGenerator
uniformRandomNumbers() :
stormm::random::RandomNumberMill< T >
unique_ag_idx :
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
unique_topology_count :
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
unit_cell :
stormm::chemistry::CondensateReader
,
stormm::chemistry::CoordinateFrameReader
,
stormm::chemistry::CoordinateSeriesReader< T >
,
stormm::chemistry::PhaseSpaceReader
,
stormm::chemistry::PsSynthesisReader
,
stormm::diskutil::CoordinateFrameReader
,
stormm::energy::CoordinateFrameReader
,
stormm::energy::CoordinateFrameWriter
,
stormm::energy::CoordinateSeriesReader< T >
,
stormm::energy::CoordinateSeriesWriter< T >
,
stormm::energy::PhaseSpaceReader
,
stormm::energy::PhaseSpaceWriter
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::mm::CoordinateFrameReader
,
stormm::mm::PhaseSpaceReader
,
stormm::mm::PhaseSpaceWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::namelist::CoordinateFrameReader
,
stormm::restraints::CoordinateFrameReader
,
stormm::review::CoordinateFrameReader
,
stormm::review::CoordinateSeriesReader< T >
,
stormm::review::MeshParamKit
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::CondensateReader
,
stormm::structure::CondensateWriter
,
stormm::structure::CoordinateFrameReader
,
stormm::structure::CoordinateFrameWriter
,
stormm::structure::CoordinateSeriesReader< T >
,
stormm::structure::CoordinateSeriesWriter< T >
,
stormm::structure::MeshParamKit
,
stormm::structure::PhaseSpaceReader
,
stormm::structure::PhaseSpaceWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::synthesis::CondensateReader
,
stormm::synthesis::CondensateWriter
,
stormm::synthesis::CoordinateFrameReader
,
stormm::synthesis::CoordinateFrameWriter
,
stormm::synthesis::CoordinateSeriesReader< T >
,
stormm::synthesis::CoordinateSeriesWriter< T >
,
stormm::synthesis::PhaseSpaceReader
,
stormm::synthesis::PhaseSpaceWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::testing::CoordinateSeriesWriter< T >
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::CondensateReader
,
stormm::trajectory::CondensateWriter
,
stormm::trajectory::CoordinateFrameReader
,
stormm::trajectory::CoordinateFrameWriter
,
stormm::trajectory::CoordinateSeriesReader< T >
,
stormm::trajectory::CoordinateSeriesWriter< T >
,
stormm::trajectory::PhaseSpaceReader
,
stormm::trajectory::PhaseSpaceWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
,
stormm::trajectory::SyNonbondedKit< T, T2 >
unprotectContent() :
stormm::namelist::ReportTable
,
stormm::review::ReportTable
unsetEntry() :
stormm::card::Ledger
update() :
stormm::chemistry::Condensate
,
stormm::reporting::ProgressBar
,
stormm::stmath::Condensate
,
stormm::structure::Condensate
,
stormm::synthesis::Condensate
,
stormm::testing::Condensate
,
stormm::trajectory::Condensate
updateCyclePosition() :
stormm::chemistry::PhaseSpace
,
stormm::chemistry::PhaseSpaceSynthesis
,
stormm::diskutil::PhaseSpace
,
stormm::diskutil::PhaseSpaceSynthesis
,
stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >
,
stormm::energy::ImplicitSolventWorkspace
,
stormm::energy::PhaseSpace
,
stormm::energy::PhaseSpaceSynthesis
,
stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >
,
stormm::mm::ImplicitSolventWorkspace
,
stormm::mm::MotionSweeper
,
stormm::mm::PhaseSpace
,
stormm::mm::PhaseSpaceSynthesis
,
stormm::namelist::PhaseSpace
,
stormm::review::PhaseSpaceSynthesis
,
stormm::stmath::PhaseSpace
,
stormm::stmath::PhaseSpaceSynthesis
,
stormm::structure::PhaseSpace
,
stormm::structure::PhaseSpaceSynthesis
,
stormm::synthesis::ImplicitSolventWorkspace
,
stormm::synthesis::PhaseSpace
,
stormm::synthesis::PhaseSpaceSynthesis
,
stormm::testing::PhaseSpace
,
stormm::testing::PhaseSpaceSynthesis
,
stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::MotionSweeper
,
stormm::trajectory::PhaseSpace
,
stormm::trajectory::PhaseSpaceSynthesis
updatePositions() :
stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
use_overflow :
stormm::energy::PMIGridAccumulator
,
stormm::energy::PMIGridFPReader
useOverflowAccumulation() :
stormm::energy::PMIGrid
UserSettings() :
stormm::namelist::UserSettings
,
stormm::review::UserSettings
useSettle() :
stormm::mm::DynamicsControls
,
stormm::namelist::DynamicsControls
,
stormm::synthesis::DynamicsControls
,
stormm::testing::DynamicsControls
,
stormm::trajectory::DynamicsControls
useShake() :
stormm::mm::DynamicsControls
,
stormm::namelist::DynamicsControls
,
stormm::synthesis::DynamicsControls
,
stormm::testing::DynamicsControls
,
stormm::trajectory::DynamicsControls
usesSettle() :
stormm::chemistry::AtomGraph
,
stormm::data_types::AtomGraph
,
stormm::energy::AtomGraph
,
stormm::mm::AtomGraph
,
stormm::modeling::AtomGraph
,
stormm::namelist::AtomGraph
,
stormm::restraints::AtomGraph
,
stormm::review::AtomGraph
,
stormm::structure::AtomGraph
,
stormm::synthesis::AtomGraph
,
stormm::testing::AtomGraph
,
stormm::topology::AtomGraph
,
stormm::trajectory::AtomGraph
usesShake() :
stormm::chemistry::AtomGraph
,
stormm::data_types::AtomGraph
,
stormm::energy::AtomGraph
,
stormm::mm::AtomGraph
,
stormm::modeling::AtomGraph
,
stormm::namelist::AtomGraph
,
stormm::restraints::AtomGraph
,
stormm::review::AtomGraph
,
stormm::structure::AtomGraph
,
stormm::synthesis::AtomGraph
,
stormm::testing::AtomGraph
,
stormm::topology::AtomGraph
,
stormm::trajectory::AtomGraph
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