STORMM Source Documentation
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Here is a list of all documented class members with links to the class documentation for each member:
- r -
ra :
stormm::topology::SettleParm
Ran2Generator() :
stormm::random::Ran2Generator
,
stormm::stmath::Ran2Generator
RandomControls() :
stormm::namelist::RandomControls
randomize() :
stormm::review::TickCounter< T >
,
stormm::stmath::TickCounter< T >
,
stormm::synthesis::TickCounter< T >
randomizeSystem() :
stormm::synthesis::SynthesisPermutor
RandomNumberMill() :
stormm::random::RandomNumberMill< T >
rangl_acc :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rangl_finl_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rangl_finl_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_finl_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rangl_finl_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_i_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_init_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rangl_init_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_init_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rangl_init_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_insr :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rangl_j_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_k_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rangl_step_bounds :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rattle_ext :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
rattle_fails :
stormm::review::WatcherReader
,
stormm::review::WatcherWriter
rattle_iter :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
rattle_tol :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
rb :
stormm::topology::SettleParm
rbond_acc :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rbond_finl_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rbond_finl_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rbond_finl_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rbond_finl_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rbond_i_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rbond_init_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rbond_init_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rbond_init_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rbond_init_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rbond_insr :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rbond_j_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rbond_step_bounds :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rc :
stormm::topology::SettleParm
rdihe_acc :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdihe_finl_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdihe_finl_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_finl_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdihe_finl_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_i_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_init_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdihe_init_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_init_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdihe_init_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_insr :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdihe_j_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_k_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_l_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rdihe_step_bounds :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rdwu_abstracts :
stormm::mm::ReductionKit
,
stormm::stmath::ReductionKit
rdwu_progress :
stormm::energy::MMControlKit< T >
,
stormm::mm::MMControlKit< T >
,
stormm::stmath::MMControlKit< T >
,
stormm::trajectory::MMControlKit< T >
read_assign :
stormm::energy::TilePlan
readAllFreeFrames() :
stormm::namelist::FilesControls
,
stormm::review::FilesControls
,
stormm::synthesis::FilesControls
,
stormm::testing::FilesControls
readHost() :
stormm::card::Hybrid< T >
,
stormm::chemistry::Hybrid< T >
,
stormm::diskutil::Hybrid< T >
,
stormm::energy::Hybrid< T >
,
stormm::generalized_born_defaults::Hybrid< T >
,
stormm::mm::Hybrid< T >
,
stormm::numerics::Hybrid< T >
,
stormm::random::Hybrid< T >
,
stormm::restraints::Hybrid< T >
,
stormm::review::Hybrid< T >
,
stormm::stmath::Hybrid< T >
,
stormm::structure::Hybrid< T >
,
stormm::synthesis::Hybrid< T >
,
stormm::topology::Hybrid< T >
,
stormm::trajectory::Hybrid< T >
reallocate() :
stormm::structure::MeshForceField< T >
rebuild() :
stormm::chemistry::Condensate
,
stormm::stmath::Condensate
,
stormm::structure::Condensate
,
stormm::synthesis::Condensate
,
stormm::testing::Condensate
,
stormm::trajectory::Condensate
ReceptorControls() :
stormm::namelist::ReceptorControls
reduce_prep :
stormm::energy::TilePlan
ReductionBridge() :
stormm::mm::ReductionBridge
,
stormm::stmath::ReductionBridge
ReductionKit() :
stormm::mm::ReductionKit
,
stormm::stmath::ReductionKit
ReductionWorkUnit() :
stormm::stmath::ReductionWorkUnit
,
stormm::synthesis::ReductionWorkUnit
referenceData() :
stormm::structure::MeshForceField< T >
refresh() :
stormm::energy::Thermostat
,
stormm::mm::Thermostat
,
stormm::trajectory::Thermostat
relevance :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
RemdControls() :
stormm::namelist::RemdControls
removeExclusions() :
stormm::topology::Map1234
removeFreeCoordinateName() :
stormm::namelist::FilesControls
,
stormm::review::FilesControls
,
stormm::synthesis::FilesControls
,
stormm::testing::FilesControls
removeFreeTopologyName() :
stormm::namelist::FilesControls
,
stormm::review::FilesControls
,
stormm::synthesis::FilesControls
,
stormm::testing::FilesControls
removeSystem() :
stormm::namelist::FilesControls
,
stormm::review::FilesControls
,
stormm::synthesis::FilesControls
,
stormm::testing::FilesControls
RenderOptions() :
stormm::namelist::RenderOptions
,
stormm::review::RenderOptions
replica_idx :
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
reportAverageStates() :
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::ScoreCard
,
stormm::structure::ScoreCard
,
stormm::synthesis::ScoreCard
ReportControls() :
stormm::namelist::ReportControls
,
stormm::review::ReportControls
,
stormm::structure::ReportControls
reportHistory() :
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::ScoreCard
,
stormm::structure::ScoreCard
,
stormm::synthesis::ScoreCard
reportInstantaneousStates() :
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::ScoreCard
,
stormm::structure::ScoreCard
,
stormm::synthesis::ScoreCard
reportNamelistTypeProblem() :
stormm::namelist::NamelistElement
reportPotentialEnergies() :
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::ScoreCard
,
stormm::structure::ScoreCard
,
stormm::synthesis::ScoreCard
ReportTable() :
stormm::namelist::ReportTable
,
stormm::review::ReportTable
reportVarianceOfStates() :
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::ScoreCard
,
stormm::structure::ScoreCard
,
stormm::synthesis::ScoreCard
res_limits :
stormm::chemistry::ChemicalDetailsKit
,
stormm::energy::ChemicalDetailsKit
,
stormm::mm::ChemicalDetailsKit
,
stormm::restraints::ChemicalDetailsKit
,
stormm::review::ChemicalDetailsKit
,
stormm::structure::ChemicalDetailsKit
,
stormm::synthesis::ChemicalDetailsKit
,
stormm::topology::ChemicalDetailsKit
,
stormm::trajectory::ChemicalDetailsKit
res_names :
stormm::chemistry::ChemicalDetailsKit
,
stormm::energy::ChemicalDetailsKit
,
stormm::mm::ChemicalDetailsKit
,
stormm::restraints::ChemicalDetailsKit
,
stormm::review::ChemicalDetailsKit
,
stormm::structure::ChemicalDetailsKit
,
stormm::synthesis::ChemicalDetailsKit
,
stormm::topology::ChemicalDetailsKit
,
stormm::trajectory::ChemicalDetailsKit
res_numbers :
stormm::chemistry::ChemicalDetailsKit
,
stormm::energy::ChemicalDetailsKit
,
stormm::mm::ChemicalDetailsKit
,
stormm::restraints::ChemicalDetailsKit
,
stormm::review::ChemicalDetailsKit
,
stormm::structure::ChemicalDetailsKit
,
stormm::synthesis::ChemicalDetailsKit
,
stormm::topology::ChemicalDetailsKit
,
stormm::trajectory::ChemicalDetailsKit
reserve() :
stormm::chemistry::CoordinateSeries< T >
,
stormm::diskutil::CoordinateSeries< T >
,
stormm::energy::CoordinateSeries< T >
,
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::CoordinateSeries< T >
,
stormm::review::ScoreCard
,
stormm::review::SectionContents
,
stormm::stmath::CoordinateSeries< T >
,
stormm::structure::CoordinateSeries< T >
,
stormm::structure::ScoreCard
,
stormm::synthesis::CoordinateSeries< T >
,
stormm::synthesis::ScoreCard
,
stormm::testing::CoordinateSeries< T >
,
stormm::trajectory::CoordinateSeries< T >
reset() :
stormm::reporting::ProgressBar
,
stormm::review::TickCounter< T >
,
stormm::stmath::HpcMatrix< T >
,
stormm::stmath::TickCounter< T >
,
stormm::synthesis::TickCounter< T >
resetSampleCount() :
stormm::energy::ScoreCard
,
stormm::mm::ScoreCard
,
stormm::review::ScoreCard
,
stormm::structure::ScoreCard
,
stormm::synthesis::ScoreCard
resize() :
stormm::card::Hybrid< T >
,
stormm::chemistry::CoordinateSeries< T >
,
stormm::chemistry::Hybrid< T >
,
stormm::diskutil::CoordinateSeries< T >
,
stormm::diskutil::Hybrid< T >
,
stormm::energy::CoordinateSeries< T >
,
stormm::energy::Hybrid< T >
,
stormm::generalized_born_defaults::Hybrid< T >
,
stormm::mm::Hybrid< T >
,
stormm::numerics::Hybrid< T >
,
stormm::random::Hybrid< T >
,
stormm::restraints::Hybrid< T >
,
stormm::review::CoordinateSeries< T >
,
stormm::review::Hybrid< T >
,
stormm::stmath::ClusterManager< Tdata, Tcalc >
,
stormm::stmath::CoordinateSeries< T >
,
stormm::stmath::HpcMatrix< T >
,
stormm::stmath::Hybrid< T >
,
stormm::structure::CoordinateSeries< T >
,
stormm::structure::Hybrid< T >
,
stormm::synthesis::ClusterManager< Tdata, Tcalc >
,
stormm::synthesis::CoordinateSeries< T >
,
stormm::synthesis::Hybrid< T >
,
stormm::testing::CoordinateSeries< T >
,
stormm::topology::Hybrid< T >
,
stormm::trajectory::CoordinateSeries< T >
,
stormm::trajectory::Hybrid< T >
RestraintApparatus() :
stormm::energy::RestraintApparatus
,
stormm::mm::RestraintApparatus
,
stormm::restraints::RestraintApparatus
,
stormm::structure::RestraintApparatus
,
stormm::synthesis::RestraintApparatus
RestraintControls() :
stormm::namelist::RestraintControls
,
stormm::synthesis::RestraintControls
RestraintKit() :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
revealBitString() :
stormm::random::Xoroshiro128pGenerator
,
stormm::random::Xoshiro256ppGenerator
,
stormm::stmath::Xoshiro256ppGenerator
,
stormm::synthesis::Xoshiro256ppGenerator
,
stormm::testing::Xoshiro256ppGenerator
,
stormm::trajectory::Xoshiro256ppGenerator
revealState() :
stormm::random::Xoroshiro128pGenerator
,
stormm::random::Xoshiro256ppGenerator
,
stormm::stmath::Xoshiro256ppGenerator
,
stormm::synthesis::Xoshiro256ppGenerator
,
stormm::testing::Xoshiro256ppGenerator
,
stormm::trajectory::Xoshiro256ppGenerator
reverse() :
stormm::review::TickCounter< T >
,
stormm::stmath::TickCounter< T >
,
stormm::synthesis::TickCounter< T >
rightSize() :
stormm::chemistry::TextGuard
,
stormm::docs::TextGuard
,
stormm::namelist::TextGuard
,
stormm::parse::TextGuard
,
stormm::testing::TextGuard
ring_atom_bounds :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
ring_atoms :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
ring_count :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
ring_inclusion :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
rlrs :
stormm::review::BackgroundMeshReader< Tdata >
,
stormm::structure::BackgroundMeshReader< Tdata >
,
stormm::structure::BackgroundMeshWriter< Tdata >
RMSDPlan() :
stormm::structure::RMSDPlan
RMSDPlanReader() :
stormm::structure::RMSDPlanReader< T >
rng_mode :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
rot_bond_markers :
stormm::synthesis::SyPermutorKit< T >
rot_bond_settings :
stormm::synthesis::SyPermutorKit< T >
rot_bond_settings_bounds :
stormm::synthesis::SyPermutorKit< T >
rot_grp_atoms :
stormm::synthesis::SyPermutorKit< T >
rot_grp_bounds :
stormm::synthesis::SyPermutorKit< T >
rotatable_bond_count :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
rotatable_group_bounds :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
rotatable_groups :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
rotatableGroupsMapped() :
stormm::chemistry::ChemicalFeatures
,
stormm::namelist::ChemicalFeatures
,
stormm::restraints::ChemicalFeatures
,
stormm::structure::ChemicalFeatures
,
stormm::synthesis::ChemicalFeatures
rotating_groups_mapped :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
rposn_acc :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_atoms :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rposn_finl_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_finl_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rposn_finl_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_finl_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rposn_finl_xy :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_finl_z :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_init_k :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_init_keq :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rposn_init_r :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_init_step :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
rposn_init_xy :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_init_z :
stormm::energy::RestraintKit< T, T2, T4 >
,
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::RestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::restraints::RestraintKit< T, T2, T4 >
,
stormm::synthesis::RestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_insr :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rposn_step_bounds :
stormm::energy::SyRestraintKit< T, T2, T4 >
,
stormm::mm::SyRestraintKit< T, T2, T4 >
,
stormm::synthesis::SyRestraintKit< T, T2, T4 >
rps :
stormm::mm::ReductionKit
,
stormm::stmath::ReductionKit
running_accumulators :
stormm::energy::ScoreCardReader
,
stormm::energy::ScoreCardWriter
,
stormm::mm::ScoreCardWriter
rxmv :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rxmv_nxt :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rxmv_nxt_ovrf :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rxmv_ovrf :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rymv :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rymv_nxt :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rymv_nxt_ovrf :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rymv_ovrf :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rzmv :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rzmv_nxt :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rzmv_nxt_ovrf :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
rzmv_ovrf :
stormm::trajectory::MotionSweepReader
,
stormm::trajectory::MotionSweepWriter
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