Here is a list of all documented class members with links to the class documentation for each member:
- m -
- m_atom : stormm::topology::CmapTerm< T >
- makeAtomAssignments() : stormm::topology::BasicValenceTable, stormm::topology::CharmmValenceTable
- makeAtomMoveList() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
- makeAtomUpdateMask() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
- Map1234() : stormm::topology::Map1234
- margin() : stormm::chemistry::Approx, stormm::stmath::Approx, stormm::synthesis::Approx, stormm::testing::Approx, stormm::topology::Approx, stormm::trajectory::Approx
- markAtomAddition() : stormm::synthesis::ValenceDelegator
- markImageRelevance() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
- mask1 : stormm::energy::ForwardExclusionMaskReader
- mask2 : stormm::energy::ForwardExclusionMaskReader
- mask2_size : stormm::energy::ForwardExclusionMaskReader
- mask_data : stormm::energy::SeMaskSynthesisReader, stormm::energy::StaticExclusionMaskReader, stormm::mm::StaticExclusionMaskReader, stormm::structure::StaticExclusionMaskReader, stormm::synthesis::SeMaskSynthesisReader, stormm::synthesis::StaticExclusionMaskReader
- MaskComponent() : stormm::chemistry::MaskComponent
- mass_fraction : stormm::structure::RMSDPlanReader< T >
- masses : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::energy::SyAtomUpdateKit< T, T2, T4 >, stormm::mm::ChemicalDetailsKit, stormm::mm::SyAtomUpdateKit< T, T2, T4 >, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::structure::RMSDPlanReader< T >, stormm::structure::SyAtomUpdateKit< T, T2, T4 >, stormm::synthesis::ChemicalDetailsKit, stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit, stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
- matchItemName() : stormm::structure::MdlMolDataItem
- matchOverflowAtomName() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
- matchOverflowAtomType() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
- matchOverflowResidueName() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
- max_atoms : stormm::energy::CacheResourceKit< T >, stormm::structure::CacheResourceKit< T >, stormm::trajectory::CacheResourceKit< T >
- max_blocks : stormm::energy::CacheResourceKit< T >, stormm::structure::CacheResourceKit< T >, stormm::trajectory::CacheResourceKit< T >
- max_cycles : stormm::energy::MMControlKit< T >, stormm::mm::MMControlKit< T >, stormm::stmath::MMControlKit< T >, stormm::trajectory::MMControlKit< T >
- max_grid_points : stormm::energy::PMIGridWriter
- max_reports : stormm::review::WatcherReader, stormm::review::WatcherWriter
- max_ring_size : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
- max_separation : stormm::generalized_born_defaults::NeckGeneralizedBornKit< T >
- max_span : stormm::review::MeshParamKit, stormm::structure::MeshParamKit
- max_value : stormm::generalized_born_defaults::NeckGeneralizedBornKit< T >
- mbss : stormm::review::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshWriter< Tdata >
- MdlMol() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
- MdlMolAtomList() : stormm::structure::MdlMolAtomList
- MdlMolBond() : stormm::structure::MdlMolBond
- MdlMolDataItem() : stormm::structure::MdlMolDataItem
- MdlMolDataRequest() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
- MdlMolProperty() : stormm::structure::MdlMolProperty
- memptr() : stormm::stmath::HpcMatrix< T >
- mesh_ticks : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
- MeshBasicsKit() : stormm::structure::MeshBasicsKit
- MeshControls() : stormm::namelist::MeshControls
- MeshFFKit() : stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >
- MeshForceField() : stormm::structure::MeshForceField< T >
- MeshFoundation() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
- MeshKlManager() : stormm::card::MeshKlManager, stormm::structure::MeshKlManager
- MeshParameters() : stormm::review::MeshParameters, stormm::structure::MeshParameters
- MeshParamKit() : stormm::review::MeshParamKit, stormm::structure::MeshParamKit
- MeshRulerKit() : stormm::structure::MeshRulerKit
- MeshRulers() : stormm::structure::MeshRulers
- mfac_a : stormm::mm::LinMinReader, stormm::mm::LinMinWriter
- mfac_b : stormm::mm::LinMinReader, stormm::mm::LinMinWriter
- mfac_c : stormm::mm::LinMinReader, stormm::mm::LinMinWriter
- mh : stormm::topology::SettleParm
- mhrmt : stormm::topology::SettleParm
- migration_keys : stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
- MinimizeControls() : stormm::mm::MinimizeControls, stormm::namelist::MinimizeControls
- MMControlKit() : stormm::energy::MMControlKit< T >, stormm::mm::MMControlKit< T >, stormm::stmath::MMControlKit< T >, stormm::trajectory::MMControlKit< T >
- mo : stormm::topology::SettleParm
- mode : stormm::chemistry::CondensateReader, stormm::energy::PMIGridAccumulator, stormm::energy::PMIGridFPReader, stormm::energy::PMIGridReader, stormm::energy::PMIGridWriter, stormm::structure::CondensateReader, stormm::structure::CondensateWriter, stormm::synthesis::CondensateReader, stormm::synthesis::CondensateWriter, stormm::trajectory::CondensateReader, stormm::trajectory::CondensateWriter
- modifyAtomMobility() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
- moh : stormm::topology::SettleParm
- mol_contents : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::mm::ChemicalDetailsKit, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::synthesis::ChemicalDetailsKit, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit
- mol_home : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::mm::ChemicalDetailsKit, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::synthesis::ChemicalDetailsKit, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit
- mol_limits : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::mm::ChemicalDetailsKit, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::synthesis::ChemicalDetailsKit, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit
- MolecularMechanicsControls() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
- MoleculeSystem() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
- mormt : stormm::topology::SettleParm
- MotionSweeper() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
- MotionSweepReader() : stormm::trajectory::MotionSweepReader
- MotionSweepWriter() : stormm::trajectory::MotionSweepWriter
- msum_buffer : stormm::stmath::ConjGradSubstrate
- msval_a : stormm::energy::ConvolutionKit< T >
- msval_b : stormm::energy::ConvolutionKit< T >
- msval_c : stormm::energy::ConvolutionKit< T >
- mv_scale : stormm::trajectory::MotionSweepReader, stormm::trajectory::MotionSweepWriter
- mval_a : stormm::energy::ConvolutionKit< T >
- mval_b : stormm::energy::ConvolutionKit< T >
- mval_c : stormm::energy::ConvolutionKit< T >