STORMM Source Documentation
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Here is a list of all documented class members with links to the class documentation for each member:
- l -
l_at :
stormm::topology::ScreeningFactorTag
l_atom :
stormm::topology::CharmmImprTerm< T >
,
stormm::topology::CmapTerm< T >
,
stormm::topology::DihedralTerm< T >
l_move :
stormm::mm::LinMinReader
,
stormm::mm::LinMinWriter
label_origins :
stormm::review::SynthesisMapReader
,
stormm::structure::SynthesisMapReader
,
stormm::synthesis::SynthesisMapReader
largest_group :
stormm::energy::SyAtomUpdateKit< T, T2, T4 >
,
stormm::mm::SyAtomUpdateKit< T, T2, T4 >
,
stormm::structure::SyAtomUpdateKit< T, T2, T4 >
,
stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >
,
stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
LayeredPotential() :
stormm::energy::LayeredPotential< T, T4 >
LayeredPotentialMetrics() :
stormm::energy::LayeredPotentialMetrics
layout :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
Ledger() :
stormm::card::Ledger
leftSize() :
stormm::chemistry::TextGuard
,
stormm::docs::TextGuard
,
stormm::namelist::TextGuard
,
stormm::parse::TextGuard
,
stormm::testing::TextGuard
LennardJonesAnalysis() :
stormm::topology::LennardJonesAnalysis
leq :
stormm::topology::BondTerm< T >
,
stormm::topology::UreyBradleyTerm< T >
LineMinimization() :
stormm::mm::LineMinimization
LinMinReader() :
stormm::mm::LinMinReader
LinMinWriter() :
stormm::mm::LinMinWriter
lj_14_sigma :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::SyValenceKit< T >
lj_idx :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::CacheResourceKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::energy::SyValenceKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::mm::SyValenceKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::CacheResourceKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::structure::SyValenceKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::CacheResourceKit< T >
,
stormm::trajectory::SyNonbondedKit< T, T2 >
,
stormm::trajectory::SyValenceKit< T >
lj_scaling :
stormm::topology::AttenuatedPair
lj_sigma :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::SyNonbondedKit< T, T2 >
lj_type_corr :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::topology::NonbondedKit< T >
lja :
stormm::structure::PairLJInteraction
,
stormm::topology::PairLJInteraction
lja_14 :
stormm::structure::PairLJInteraction
,
stormm::topology::PairLJInteraction
lja_14_coeff :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::SyValenceKit< T >
lja_coeff :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::topology::NonbondedKit< T >
ljab_coeff :
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::trajectory::SyNonbondedKit< T, T2 >
ljabc_offsets :
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::energy::SyValenceKit< T >
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::mm::SyValenceKit< T >
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::structure::SyValenceKit< T >
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::trajectory::SyNonbondedKit< T, T2 >
,
stormm::trajectory::SyValenceKit< T >
ljb :
stormm::structure::PairLJInteraction
,
stormm::topology::PairLJInteraction
ljb_14 :
stormm::structure::PairLJInteraction
,
stormm::topology::PairLJInteraction
ljb_14_coeff :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::SyValenceKit< T >
ljb_coeff :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::topology::NonbondedKit< T >
ljc_14_coeff :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::SyValenceKit< T >
ljc_coeff :
stormm::chemistry::NonbondedKit< T >
,
stormm::energy::NonbondedKit< T >
,
stormm::energy::SyNonbondedKit< T, T2 >
,
stormm::mm::NonbondedKit< T >
,
stormm::mm::SyNonbondedKit< T, T2 >
,
stormm::namelist::NonbondedKit< T >
,
stormm::restraints::NonbondedKit< T >
,
stormm::review::NonbondedKit< T >
,
stormm::structure::NonbondedKit< T >
,
stormm::structure::SyNonbondedKit< T, T2 >
,
stormm::synthesis::NonbondedKit< T >
,
stormm::synthesis::SyNonbondedKit< T, T2 >
,
stormm::topology::NonbondedKit< T >
,
stormm::trajectory::SyNonbondedKit< T, T2 >
ljrule :
stormm::review::MeshFFKit< T >
,
stormm::structure::MeshFFKit< T >
lldata :
stormm::energy::PMIGridAccumulator
,
stormm::energy::PMIGridFPReader
llint_id :
stormm::trajectory::ValidCoordinateTypes
ln_explicit :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
ln_implicit :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
load_synthesis_forces :
stormm::energy::ThermostatWriter< T >
,
stormm::mm::ThermostatReader< T >
,
stormm::mm::ThermostatWriter< T >
,
stormm::trajectory::ThermostatReader< T >
,
stormm::trajectory::ThermostatWriter< T >
loadCoordinates() :
stormm::structure::Pdb
,
stormm::synthesis::Pdb
,
stormm::trajectory::Pdb
loadNonbondedWorkUnits() :
stormm::card::AtomGraphSynthesis
,
stormm::energy::AtomGraphSynthesis
,
stormm::mm::AtomGraphSynthesis
,
stormm::review::AtomGraphSynthesis
,
stormm::stmath::AtomGraphSynthesis
,
stormm::structure::AtomGraphSynthesis
,
stormm::synthesis::AtomGraphSynthesis
,
stormm::testing::AtomGraphSynthesis
,
stormm::topology::AtomGraphSynthesis
,
stormm::trajectory::AtomGraphSynthesis
loadStateValues() :
stormm::review::TickCounter< T >
,
stormm::stmath::TickCounter< T >
,
stormm::synthesis::TickCounter< T >
loadSynthesisForces() :
stormm::energy::Thermostat
,
stormm::mm::Thermostat
,
stormm::trajectory::Thermostat
loadTopologicalData() :
stormm::structure::Pdb
,
stormm::synthesis::Pdb
,
stormm::trajectory::Pdb
LocalExclusionMask() :
stormm::energy::LocalExclusionMask
,
stormm::mm::LocalExclusionMask
LocalExclusionMaskReader() :
stormm::energy::LocalExclusionMaskReader
,
stormm::mm::LocalExclusionMaskReader
logActivities() :
stormm::energy::ValenceWorkUnit
,
stormm::synthesis::ValenceWorkUnit
logDirectoryCreated() :
stormm::testing::TestEnvironment
logFileCreated() :
stormm::testing::TestEnvironment
logMemory() :
stormm::card::Ledger
logResult() :
stormm::testing::CheckList
LogScaleSpline() :
stormm::energy::LogScaleSpline< T4 >
,
stormm::stmath::LogScaleSpline< T4 >
LogSplineTable() :
stormm::energy::LogSplineTable< T4 >
,
stormm::stmath::LogSplineTable< T4 >
longJump() :
stormm::random::Xoroshiro128pGenerator
,
stormm::random::Xoshiro256ppGenerator
,
stormm::stmath::Xoshiro256ppGenerator
,
stormm::synthesis::Xoshiro256ppGenerator
,
stormm::testing::Xoshiro256ppGenerator
,
stormm::trajectory::Xoshiro256ppGenerator
lookup :
stormm::energy::LogSplineTable< T4 >
,
stormm::energy::PPIeKit< T >
,
stormm::energy::PPIKit< T, T4 >
,
stormm::stmath::LogSplineTable< T4 >
lpos_scale :
stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >
,
stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
,
stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
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1.13.2