Here is a list of all documented functions with links to the class documentation for each member:
- r -
- Ran2Generator() : stormm::random::Ran2Generator, stormm::stmath::Ran2Generator
- RandomControls() : stormm::namelist::RandomControls
- randomize() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
- randomizeSystem() : stormm::synthesis::SynthesisPermutor
- RandomNumberMill() : stormm::random::RandomNumberMill< T >
- readAllFreeFrames() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
- readHost() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
- reallocate() : stormm::structure::MeshForceField< T >
- rebuild() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
- ReceptorControls() : stormm::namelist::ReceptorControls
- ReductionBridge() : stormm::mm::ReductionBridge, stormm::stmath::ReductionBridge
- ReductionKit() : stormm::mm::ReductionKit, stormm::stmath::ReductionKit
- ReductionWorkUnit() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit
- referenceData() : stormm::structure::MeshForceField< T >
- refresh() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
- RemdControls() : stormm::namelist::RemdControls
- removeExclusions() : stormm::topology::Map1234
- removeFreeCoordinateName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
- removeFreeTopologyName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
- removeSystem() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
- RenderOptions() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
- reportAverageStates() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- ReportControls() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
- reportHistory() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- reportInstantaneousStates() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- reportNamelistTypeProblem() : stormm::namelist::NamelistElement
- reportPotentialEnergies() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- ReportTable() : stormm::namelist::ReportTable, stormm::review::ReportTable
- reportVarianceOfStates() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- reserve() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::CoordinateSeries< T >, stormm::review::ScoreCard, stormm::review::SectionContents, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::structure::ScoreCard, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::ScoreCard, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
- reset() : stormm::reporting::ProgressBar, stormm::review::TickCounter< T >, stormm::stmath::HpcMatrix< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
- resetSampleCount() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- resize() : stormm::card::Hybrid< T >, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::Hybrid< T >, stormm::energy::CoordinateSeries< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::CoordinateSeries< T >, stormm::review::Hybrid< T >, stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::stmath::CoordinateSeries< T >, stormm::stmath::HpcMatrix< T >, stormm::stmath::Hybrid< T >, stormm::structure::CoordinateSeries< T >, stormm::structure::Hybrid< T >, stormm::synthesis::ClusterManager< Tdata, Tcalc >, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::Hybrid< T >, stormm::testing::CoordinateSeries< T >, stormm::topology::Hybrid< T >, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::Hybrid< T >
- RestraintApparatus() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
- RestraintControls() : stormm::namelist::RestraintControls, stormm::synthesis::RestraintControls
- RestraintKit() : stormm::energy::RestraintKit< T, T2, T4 >, stormm::mm::RestraintKit< T, T2, T4 >, stormm::restraints::RestraintKit< T, T2, T4 >, stormm::synthesis::RestraintKit< T, T2, T4 >
- revealBitString() : stormm::random::Xoroshiro128pGenerator, stormm::random::Xoshiro256ppGenerator, stormm::stmath::Xoshiro256ppGenerator, stormm::synthesis::Xoshiro256ppGenerator, stormm::testing::Xoshiro256ppGenerator, stormm::trajectory::Xoshiro256ppGenerator
- revealState() : stormm::random::Xoroshiro128pGenerator, stormm::random::Xoshiro256ppGenerator, stormm::stmath::Xoshiro256ppGenerator, stormm::synthesis::Xoshiro256ppGenerator, stormm::testing::Xoshiro256ppGenerator, stormm::trajectory::Xoshiro256ppGenerator
- reverse() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
- rightSize() : stormm::chemistry::TextGuard, stormm::docs::TextGuard, stormm::namelist::TextGuard, stormm::parse::TextGuard, stormm::testing::TextGuard
- RMSDPlan() : stormm::structure::RMSDPlan
- RMSDPlanReader() : stormm::structure::RMSDPlanReader< T >
- rotatableGroupsMapped() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures