Here is a list of all documented functions with links to the class documentation for each member:
- p -
- PairLJInteraction() : stormm::structure::PairLJInteraction, stormm::topology::PairLJInteraction
- ParameterUnion() : stormm::topology::ParameterUnion< T >
- parseChar4() : stormm::structure::MdlMolDataItem
- parseInteger() : stormm::structure::MdlMolDataItem
- parseReal() : stormm::structure::MdlMolDataItem
- parseString() : stormm::structure::MdlMolDataItem
- parseUnsigned() : stormm::structure::MdlMolDataItem
- parseUserInput() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
- Pdb() : stormm::structure::Pdb, stormm::synthesis::Pdb, stormm::trajectory::Pdb
- permuteSystem() : stormm::synthesis::SynthesisPermutor
- PhaseSpace() : stormm::chemistry::PhaseSpace, stormm::diskutil::PhaseSpace, stormm::energy::PhaseSpace, stormm::mm::PhaseSpace, stormm::namelist::PhaseSpace, stormm::stmath::PhaseSpace, stormm::structure::PhaseSpace, stormm::synthesis::PhaseSpace, stormm::testing::PhaseSpace, stormm::trajectory::PhaseSpace
- PhaseSpaceReader() : stormm::chemistry::PhaseSpaceReader, stormm::energy::PhaseSpaceReader, stormm::mm::PhaseSpaceReader, stormm::structure::PhaseSpaceReader, stormm::synthesis::PhaseSpaceReader, stormm::trajectory::PhaseSpaceReader
- PhaseSpaceSynthesis() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
- PhaseSpaceWriter() : stormm::energy::PhaseSpaceWriter, stormm::mm::PhaseSpaceWriter, stormm::structure::PhaseSpaceWriter, stormm::synthesis::PhaseSpaceWriter, stormm::trajectory::PhaseSpaceWriter
- placeExternalRegnoInHeader() : stormm::structure::MdlMolDataItem
- placeInternalRegistryInHeader() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
- placeInternalRegnoInHeader() : stormm::structure::MdlMolDataItem
- placeMaccsFieldInHeader() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
- placeMaccsIIFieldInHeader() : stormm::structure::MdlMolDataItem
- placeTitleInHeader() : stormm::structure::MdlMolDataItem
- PMIGrid() : stormm::energy::PMIGrid
- PMIGridAccumulator() : stormm::energy::PMIGridAccumulator
- PMIGridFPReader() : stormm::energy::PMIGridFPReader
- PMIGridReader() : stormm::energy::PMIGridReader
- PMIGridWriter() : stormm::energy::PMIGridWriter
- PPIeKit() : stormm::energy::PPIeKit< T >
- PPIKit() : stormm::energy::PPIKit< T, T4 >
- PPITable() : stormm::energy::PPITable
- PPPMControls() : stormm::mm::PPPMControls, stormm::namelist::PPPMControls
- PrecisionControls() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
- prepareFixedPrecisionModel() : stormm::energy::PMIGrid
- prepareWorkUnits() : stormm::energy::PMIGrid
- preventExitOnHelp() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
- preventHydrogenBonding() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
- primeConjugateGradientCalculation() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
- primeMoveLengths() : stormm::mm::LineMinimization
- primeWorkUnitCounters() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
- printAmberFormat() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
- printContents() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
- printDimensions() : stormm::review::MeshParameters, stormm::structure::MeshParameters
- printHelp() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
- printKeywordDocumentation() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
- printLaunchParameters() : stormm::card::KernelManager
- printList() : stormm::review::OrderedList
- printMemoryProfile() : stormm::card::Ledger
- printResults() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
- printSection() : stormm::review::SectionContents
- printSummary() : stormm::testing::CheckList
- printTable() : stormm::namelist::ReportTable, stormm::review::ReportTable
- printToFile() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
- printTrajectory() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
- printWallTimeData() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
- ProgressBar() : stormm::reporting::ProgressBar
- PsSynthesisBorders() : stormm::energy::PsSynthesisBorders, stormm::synthesis::PsSynthesisBorders, stormm::trajectory::PsSynthesisBorders
- PsSynthesisReader() : stormm::chemistry::PsSynthesisReader, stormm::energy::PsSynthesisReader, stormm::mm::PsSynthesisReader, stormm::structure::PsSynthesisReader, stormm::synthesis::PsSynthesisReader, stormm::trajectory::PsSynthesisReader
- PsSynthesisWriter() : stormm::energy::PsSynthesisWriter, stormm::mm::PsSynthesisWriter, stormm::stmath::PsSynthesisWriter, stormm::structure::PsSynthesisWriter, stormm::synthesis::PsSynthesisWriter, stormm::testing::PsSynthesisWriter, stormm::trajectory::PsSynthesisWriter
- pushBack() : stormm::card::Hybrid< T >, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::Hybrid< T >, stormm::energy::CoordinateSeries< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::CoordinateSeries< T >, stormm::review::Hybrid< T >, stormm::stmath::CoordinateSeries< T >, stormm::stmath::Hybrid< T >, stormm::structure::CoordinateSeries< T >, stormm::structure::Hybrid< T >, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::Hybrid< T >, stormm::testing::CoordinateSeries< T >, stormm::topology::Hybrid< T >, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::Hybrid< T >
- putHost() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >