Here is a list of all documented functions with links to the class documentation for each member:

- g -

• gaussianRandomNumber() : stormm::random::Ran2Generator, stormm::random::Xoroshiro128pGenerator, stormm::random::Xoshiro256ppGenerator, stormm::stmath::Ran2Generator, stormm::stmath::Xoshiro256ppGenerator, stormm::synthesis::Xoshiro256ppGenerator, stormm::testing::Xoshiro256ppGenerator, stormm::trajectory::Xoshiro256ppGenerator
• gaussianRandomNumbers() : stormm::random::RandomNumberMill< T >
• GenericRdSubstrate() : stormm::stmath::GenericRdSubstrate< T >
• getAbsoluteClashDistance() : stormm::mm::MinimizeControls, stormm::namelist::MinimizeControls
• getAbstract() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::NonbondedWorkUnit, stormm::synthesis::ReductionWorkUnit
• getAccumulationFlags() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getACoefficients() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getActiveEntryCount() : stormm::card::Ledger
• getAddedPointColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getAddedPointSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getAlignmentMask() : stormm::namelist::ReceptorControls
• getAlignmentMethod() : stormm::namelist::ReceptorControls
• getAlignmentProtocol() : stormm::structure::RMSDPlan
• getAllBoolValues() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getAllIntValues() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getAllocations() : stormm::card::Hybrid< T >, stormm::card::Ledger, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• getAllRealValues() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getAllStringValues() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getAllSurfaces() : stormm::topology::CmapSurfaceUnion
• getAlpha() : stormm::namelist::MeshControls
• getAmplitude() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getAnalyticDerivative() : stormm::energy::LayeredPotential< T, T4 >
• getAnalyticValue() : stormm::energy::LayeredPotential< T, T4 >
• getAndersenFrequency() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getAndersenResetFrequency() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getAngleAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getAngleAffectors() : stormm::synthesis::ValenceDelegator
• getAngleInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAngleInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAngleParameterCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getAngleRestraintAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getAngleRestraintAffectors() : stormm::synthesis::ValenceDelegator
• getAngleRestraintCount() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getAngleRestraintInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAngleRestraintInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAngleTerm() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAngleTermCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getAngularVelocity() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getApplicationStepPointer() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getApproximatePermutationCount() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getArchBlockMultiplier() : stormm::card::CoreKlManager, stormm::card::MeshKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::structure::MeshKlManager, stormm::trajectory::CoreKlManager
• getArchMajor() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getArchMinor() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getAromaticGroupCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getAromaticMask() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getAsymmetricAtomCount() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getAsymmetricAtoms() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getAtom() : stormm::chemistry::BondedNode
• getAtomAssignmentCount() : stormm::synthesis::ValenceDelegator
• getAtomChirality() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getAtomCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::chemistry::ChemicalFeatures, stormm::chemistry::Condensate, stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::IndigoTable, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::data_types::AtomGraph, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::ForwardExclusionMask, stormm::energy::LocalExclusionMask, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::energy::StaticExclusionMask, stormm::energy::StaticExclusionMaskSynthesis, stormm::energy::Thermostat, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::mm::CoordinateFrame, stormm::mm::LocalExclusionMask, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::mm::StaticExclusionMask, stormm::mm::StaticExclusionMaskSynthesis, stormm::mm::Thermostat, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::ChemicalFeatures, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::restraints::AtomGraph, stormm::restraints::ChemicalFeatures, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::Condensate, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::structure::ChemicalFeatures, stormm::structure::Condensate, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::MdlMol, stormm::structure::Pdb, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::structure::StaticExclusionMask, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::ChemicalFeatures, stormm::synthesis::Condensate, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::ForwardExclusionMask, stormm::synthesis::MdlMol, stormm::synthesis::Pdb, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::synthesis::StaticExclusionMask, stormm::synthesis::StaticExclusionMaskSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::testing::Condensate, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::MdlMol, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphStage, stormm::topology::AtomGraphSynthesis, stormm::topology::MdlMol, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::Condensate, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::Pdb, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis, stormm::trajectory::Thermostat
• getAtomEnd() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit
• getAtomExclusions() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomicMass() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomicMasses() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getAtomicNumber() : stormm::chemistry::AtomGraph, stormm::chemistry::IndigoAtomCenter, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::structure::MdlMol, stormm::synthesis::AtomGraph, stormm::synthesis::MdlMol, stormm::testing::AtomGraph, stormm::testing::MdlMol, stormm::topology::AtomGraph, stormm::topology::MdlMol, stormm::trajectory::AtomGraph
• getAtomicNumbers() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getAtomImportList() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAtomIndex() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getAtomManipulationMasks() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAtomMask() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
• getAtomMobility() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomMobilityMask() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomName() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomOffset() : stormm::card::AtomGraphSynthesis, stormm::chemistry::Condensate, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::energy::StaticExclusionMaskSynthesis, stormm::mm::AtomGraphSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::mm::StaticExclusionMaskSynthesis, stormm::review::AtomGraphSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::Condensate, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraphSynthesis, stormm::structure::Condensate, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::Condensate, stormm::synthesis::PhaseSpaceSynthesis, stormm::synthesis::StaticExclusionMaskSynthesis, stormm::testing::AtomGraphSynthesis, stormm::testing::Condensate, stormm::testing::PhaseSpaceSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::Condensate, stormm::trajectory::PhaseSpaceSynthesis
• getAtomPBRadius() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomStart() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit
• getAtomsWithRank() : stormm::chemistry::AtomRank
• getAtomSymbol() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getAtomSymbols() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getAtomTarget() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getAtomType() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomTypeCount() : stormm::topology::LennardJonesAnalysis
• getAtomTypeNameTable() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getAtomTypes() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
• getAtomTypeUnionSize() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getAtomUpdateFlags() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getAttachmentPoint() : stormm::structure::MdlMolAtomList
• getAttemptCount() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getAvailability() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getAvailableGpuCount() : stormm::card::HpcConfig
• getAverageBrickLength() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getAxisCoordinates() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getAxisElementCount() : stormm::namelist::MeshControls, stormm::review::MeshParameters, stormm::structure::MeshParameters
• getBankValue() : stormm::random::RandomNumberMill< T >
• getBasis() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
• getBasisSet() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getBathPartitions() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getBCoefficients() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getBeta() : stormm::namelist::MeshControls
• getBitStride() : stormm::energy::LogScaleSpline< T4 >, stormm::energy::PPITable, stormm::stmath::LogScaleSpline< T4 >
• getBlockSizeLimit() : stormm::card::KernelFormat
• getBody() : stormm::structure::MdlMolDataItem
• getBondAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getBondAffectors() : stormm::synthesis::ValenceDelegator
• getBondConstraintCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getBondConstraintTolerance() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getBondCount() : stormm::chemistry::IndigoTable, stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getBondOrderOfState() : stormm::chemistry::IndigoAtomCenter
• getBondOrders() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getBondParameterCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getBondTerm() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getBondTermCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getBoolValue() : stormm::display::NamelistEmulator, stormm::namelist::NamelistElement, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getBorderLineColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getBorderLineStyle() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getBorderLineWidth() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getBornDerivativeKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getBornRadiiCutoff() : stormm::namelist::SolventControls
• getBornRadiiKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getBoundaries() : stormm::namelist::MeshControls
• getBoundaryCondition() : stormm::energy::LayeredPotentialMetrics
• getBoundaryConditions() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getBoxDimensionPointer() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getBoxDimensions() : stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::mm::CoordinateFrame, stormm::namelist::CoordinateFrame, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >
• getBoxDimensionsHandle() : stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis
• getBoxSizePointer() : stormm::chemistry::PhaseSpace, stormm::diskutil::PhaseSpace, stormm::energy::PhaseSpace, stormm::mm::PhaseSpace, stormm::namelist::PhaseSpace, stormm::stmath::PhaseSpace, stormm::structure::PhaseSpace, stormm::synthesis::PhaseSpace, stormm::testing::PhaseSpace, stormm::trajectory::PhaseSpace
• getBoxSpaceTransform() : stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpace, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace
• getBoxSpaceTransformPointer() : stormm::chemistry::PhaseSpace, stormm::diskutil::PhaseSpace, stormm::energy::PhaseSpace, stormm::mm::PhaseSpace, stormm::namelist::PhaseSpace, stormm::stmath::PhaseSpace, stormm::structure::PhaseSpace, stormm::synthesis::PhaseSpace, stormm::testing::PhaseSpace, stormm::trajectory::PhaseSpace
• getBoxTransformHandle() : stormm::chemistry::CoordinateFrame, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateFrame, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateFrame, stormm::energy::PhaseSpace, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::stmath::CoordinateFrame, stormm::stmath::PhaseSpace, stormm::structure::CoordinateFrame, stormm::structure::PhaseSpace, stormm::synthesis::CoordinateFrame, stormm::synthesis::PhaseSpace, stormm::testing::CoordinateFrame, stormm::testing::PhaseSpace, stormm::trajectory::CoordinateFrame, stormm::trajectory::PhaseSpace
• getBoxTransformPointer() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getBoxTransforms() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getBoxTransformsHandle() : stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::CoordinateSeries< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpaceSynthesis
• getBoxVectorsHandle() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getBoxVectorsOverflowHandle() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getBranchAtom() : stormm::chemistry::BondedNode
• getBranchCount() : stormm::chemistry::BondedNode
• getBrickCount() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getBrickLengths() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getBrickLengthsWithHalo() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getBrickOrigin() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getBrickOriginWithHalo() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getBufferWidth() : stormm::namelist::MeshControls
• getBuildPrecision() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getByline() : stormm::parse::Citation, stormm::topology::Citation
• getCacheConfiguration() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getCachedRandomResult() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getCacheLabelCount() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getCachePointer() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::RMSDPlan, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getCacheSystemCount() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getCacheTopologyCount() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getCamlightPosition() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getCardName() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getCardRam() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getCaseSensitivity() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getCategoryAverageInterval() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCategoryDuration() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCategoryIndex() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCategoryMaximumTime() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCategoryMinimumTime() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCategoryName() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCategorySamples() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getCellBaseCapacity() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getCellCount() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getCellGridAccumulatorTypeID() : stormm::energy::PMIGrid
• getCellGridCalculationTypeID() : stormm::energy::PMIGrid
• getCellGridCoordinateTypeID() : stormm::energy::PMIGrid
• getCellGridMatrixTypeID() : stormm::energy::PMIGrid
• getCellGridPointer() : stormm::energy::PMIGrid
• getCellLength() : stormm::stmath::TricubicCell< T >, stormm::structure::TricubicCell< T >
• getCellLocation() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getCellOrigin() : stormm::stmath::TricubicCell< T >, stormm::structure::TricubicCell< T >
• getCenterCount() : stormm::chemistry::IndigoFragment
• getCenterOfMass() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getCenterOfMassBitCount() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getCenterOfMassMotionPurgeFrequency() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getChainLocation() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getChar() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getCharge() : stormm::chemistry::IndigoAtomCenter, stormm::chemistry::IndigoFragment, stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getChargeIndex() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getChargeMeshScalingBits() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getChargeParameter() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getChargesAndBestEnergies() : stormm::chemistry::IndigoFragment
• getChargeStates() : stormm::chemistry::IndigoFragment
• getChargeTypeCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getCharmmImproperAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getCharmmImproperAffectors() : stormm::synthesis::ValenceDelegator
• getCharmmImproperParameterCount() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getCharmmImproperTermCount() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getCharmmImprParameterCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getCharmmImprTerm() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getCharmmImprTermCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getCheckpointFileKind() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getCheckpointFileName() : stormm::namelist::FilesControls, stormm::namelist::MoleculeSystem, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::synthesis::MoleculeSystem, stormm::testing::FilesControls
• getCheckpointFormat() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getCheckpointKind() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getCheckpointName() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getCheckpointProduction() : stormm::mm::MinimizeControls, stormm::namelist::MinimizeControls
• getChemicalDetailsKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getChemicalFeaturesPointer() : stormm::synthesis::SynthesisPermutor
• getChiralArmBaseAtoms() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getChiralCenterCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures, stormm::synthesis::SynthesisPermutor
• getChiralCenters() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getChiralInversionGroups() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getChiralInversionMethods() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getChiralityMask() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getChiralPlan() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getCisTransBondCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures, stormm::synthesis::SynthesisPermutor
• getCisTransBondSampleCount() : stormm::synthesis::SynthesisPermutor
• getCisTransBondSnapThreshold() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCisTransGroup() : stormm::synthesis::SynthesisPermutor
• getCisTransIsomerizationGroups() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getCisTransSampleCount() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCisTransSampleValues() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCitationIndex() : stormm::parse::Citation, stormm::topology::Citation
• getClashCount() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• getClashDampingCycles() : stormm::mm::MinimizeControls, stormm::namelist::MinimizeControls
• getClashDescription() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• getClashDistance() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >, stormm::structure::ClashReport, stormm::structure::MeshForceField< T >, stormm::synthesis::ClashReport
• getClashingPair() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• getClashKind() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• getClashPairTolerance() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getClashRatio() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >, stormm::structure::MeshForceField< T >
• getClusterCentroid() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getClusterCentroids() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getClusterCount() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getClusterHome() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getClusterMembers() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getClusterPrime() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getClusterSize() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getCmapAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getCmapAffectors() : stormm::synthesis::ValenceDelegator
• getCmapDimension() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getCmapInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCmapInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCmapSurface() : stormm::topology::CmapSurfaceUnion
• getCmapSurfaceCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getCmapTerm() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getCmapTermCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getCode() : stormm::structure::MdlMolProperty
• getCoefficient() : stormm::stmath::TricubicCell< T >, stormm::structure::TricubicCell< T >
• getCoefficients() : stormm::stmath::TricubicCell< T >, stormm::structure::TricubicCell< T >
• getCoefficientScalingBits() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getCoefficientScalingFactor() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getColumnCount() : stormm::namelist::ReportTable, stormm::review::ReportTable
• getColumnWidth() : stormm::namelist::ReportTable, stormm::review::ReportTable
• getCombiningRule() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >, stormm::structure::MeshForceField< T >
• getComment() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• getCommentCount() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• getCommonPathLimit() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getCommonPathThreshold() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getComponentCount() : stormm::review::SectionContents
• getComponentType() : stormm::review::SectionContents
• getCompositeBondInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCompositeBondInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCompositeBondTaskList() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCompositeDihedralInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCompositeDihedralInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getCompositeDihedralTaskList() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getConformerNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getConformerPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getConstrainedDegreesOfFreedom() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getConstraintGroupAffectors() : stormm::synthesis::ValenceDelegator
• getConstraintGroupAtoms() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getConstraintGroupCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getConstraintGroupInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getConstraintGroupInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getConstraintGroupTotalSize() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getContentKind() : stormm::namelist::ReportTable, stormm::review::ReportTable
• getContributingTopologyCount() : stormm::topology::CmapSurfaceUnion
• getConvergenceTarget() : stormm::mm::MinimizeControls, stormm::namelist::MinimizeControls
• getCoordinateBasePath() : stormm::testing::TestSystemManager
• getCoordinateExtension() : stormm::testing::TestSystemManager
• getCoordinateFile() : stormm::testing::TestSystemManager
• getCoordinateHandle() : stormm::chemistry::CoordinateFrame, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::CoordinateFrame, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CoordinateFrame, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::review::PhaseSpaceSynthesis, stormm::stmath::CoordinateFrame, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::CoordinateFrame, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::CoordinateFrame, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::CoordinateFrame, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::CoordinateFrame, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis
• getCoordinateOverflowHandle() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getCoordinatePointer() : stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::mm::PhaseSpace, stormm::mm::SystemCache, stormm::namelist::PhaseSpace, stormm::review::BackgroundMesh< T >, stormm::review::CoordinateSeries< T >, stormm::review::MeshFoundation, stormm::review::SystemCache, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::structure::BackgroundMesh< T >, stormm::structure::CoordinateSeries< T >, stormm::structure::MeshFoundation, stormm::structure::PhaseSpace, stormm::structure::SystemCache, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::synthesis::SystemCache, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::testing::SystemCache, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace, stormm::trajectory::SystemCache
• getCoordinateReference() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getCoordinates() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::MdlMol, stormm::structure::SystemCache, stormm::synthesis::MdlMol, stormm::synthesis::SystemCache, stormm::testing::MdlMol, stormm::testing::SystemCache, stormm::topology::MdlMol, stormm::trajectory::SystemCache
• getCoordinateSeries() : stormm::structure::Pdb, stormm::synthesis::Pdb, stormm::trajectory::Pdb
• getCoordinateSeriesTypeID() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
• getCoordinateSynthesisPointer() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::PMIGrid, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::RMSDPlan, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::SynthesisCacheMap
• getCoreAtomMask() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCoreDataItemName() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCoreR2Value() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCoreR3Value() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCoreRK2Value() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCoreRK3Value() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getCorrespondence() : stormm::topology::CmapSurfaceUnion, stormm::topology::LennardJonesAnalysis, stormm::topology::ParameterUnion< T >
• getCoulombConstant() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::energy::ConvolutionManager, stormm::energy::LayeredPotentialMetrics, stormm::energy::LogScaleSpline< T4 >, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::mm::DynamicsControls, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::DynamicsControls, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::LogScaleSpline< T4 >, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::DynamicsControls, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::testing::DynamicsControls, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::DynamicsControls
• getCpuRattleMethod() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getCurrentSection() : stormm::testing::CheckList
• getCurve() : stormm::stmath::HilbertSFC
• getCurveIndex() : stormm::stmath::HilbertSFC
• getCutoff() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::LayeredPotentialMetrics, stormm::energy::PPITable, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::PPPMControls, stormm::namelist::PPPMControls, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getCyclePosition() : stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::ImplicitSolventWorkspace, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::ImplicitSolventWorkspace, stormm::mm::MotionSweeper, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::namelist::PhaseSpace, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::ImplicitSolventWorkspace, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::MotionSweeper, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis
• getData() : stormm::stmath::TricubicCell< T >, stormm::structure::TricubicCell< T >
• getDataItemContent() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getDataItemCount() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getDataItemIndex() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getDataItemKind() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getDataItemName() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getDataItemOutputName() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getDataLine() : stormm::structure::MdlMolDataItem, stormm::structure::MdlMolProperty
• getDataLineCount() : stormm::structure::MdlMolDataItem, stormm::structure::MdlMolProperty
• getDataPointCount() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• getDataRowCount() : stormm::namelist::ReportTable, stormm::review::ReportTable
• getDataStride() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• getDefaultCombiningRule() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getDegreesOfFreedom() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getDelegatorPointer() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getDensityMappingKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getDependencyEnd() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit
• getDependencyStart() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit
• getDepth() : stormm::random::RandomNumberMill< T >
• getDescription() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getDescriptor() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getDetail() : stormm::namelist::MeshControls
• getDiagnosticPrintFrequency() : stormm::mm::DynamicsControls, stormm::mm::MinimizeControls, stormm::namelist::DynamicsControls, stormm::namelist::MinimizeControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getDielectricConstant() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getDihedralAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getDihedralAffectors() : stormm::synthesis::ValenceDelegator
• getDihedralParameterCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getDihedralRestraintAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getDihedralRestraintAffectors() : stormm::synthesis::ValenceDelegator
• getDihedralRestraintCount() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getDihedralRestraintInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getDihedralRestraintInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getDihedralTerm() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getDihedralTermCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getDimension() : stormm::stmath::HilbertSFC
• getDimensions() : stormm::review::BackgroundMesh< T >, stormm::stmath::HilbertSFC, stormm::structure::BackgroundMesh< T >, stormm::structure::BackgroundMeshComposition< T >
• getDirectSumTolerance() : stormm::energy::PPITable, stormm::mm::PPPMControls, stormm::namelist::PPPMControls
• getDisplacementPointer() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getDisplacements() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getDisplayTimingsOrder() : stormm::testing::TestEnvironment
• getDistanceRestraintAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getDistanceRestraintAffectors() : stormm::synthesis::ValenceDelegator
• getDistanceRestraintCount() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getDistanceRestraintInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getDistanceRestraintInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getDoublePrecisionAtomUpdateKit() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getDoublePrecisionConstraintKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getDoublePrecisionImplicitSolventKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getDoublePrecisionNonbondedKit() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getDoublePrecisionRestraintKit() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getDoublePrecisionValenceKit() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getDoublePrecisionVirtualSiteKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getDynamicsNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getDynamicsPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getEditCount() : stormm::namelist::FFMorphControls
• getEffectiveCutoff() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getElec14Screening() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getElecClashDistance() : stormm::namelist::MeshControls
• getElectrostatic14Screening() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::topology::AtomGraphStage, stormm::trajectory::AtomGraph
• getElectrostaticCutoff() : stormm::energy::MolecularMechanicsControls, stormm::mm::DynamicsControls, stormm::mm::MinimizeControls, stormm::mm::MolecularMechanicsControls, stormm::namelist::DynamicsControls, stormm::namelist::MinimizeControls, stormm::stmath::MolecularMechanicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::MolecularMechanicsControls
• getElectrostaticScaling() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getElementColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getElementSampleCount() : stormm::synthesis::SynthesisPermutor
• getElementSampleCounts() : stormm::synthesis::SynthesisPermutor
• getElementSize() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• getEnergy() : stormm::mm::LineMinimization
• getEnergyComponent() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
• getEnergyDecimalPlaces() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getEnergySamplingMethod() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getEnergyScaleBits() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• getEnergyScalingBits() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getEnergyScalingFactor() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• getEnsemblePointer() : stormm::review::BackgroundMesh< T >, stormm::review::MeshFoundation, stormm::structure::BackgroundMesh< T >, stormm::structure::MeshFoundation
• getEnsembleTypeCode() : stormm::review::BackgroundMesh< T >, stormm::review::MeshFoundation, stormm::structure::BackgroundMesh< T >, stormm::structure::MeshFoundation
• getEntry() : stormm::card::Ledger, stormm::structure::MdlMolAtomList
• getEntryCount() : stormm::namelist::NamelistElement, stormm::structure::MdlMolAtomList, stormm::structure::MdlMolProperty
• getEpsilon() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getEquilibriumConstant() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getErrorEstimate() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getEstablishment() : stormm::namelist::NamelistElement
• getEwaldCoefficient() : stormm::energy::ConvolutionManager, stormm::energy::LayeredPotentialMetrics, stormm::energy::LogScaleSpline< T4 >, stormm::energy::PPITable, stormm::mm::PPPMControls, stormm::namelist::PPPMControls, stormm::stmath::LogScaleSpline< T4 >
• getExactPermutationCount() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getExceptionBehavior() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getExchangeProbability() : stormm::namelist::RemdControls
• getExclusionCode() : stormm::structure::MdlMolAtomList, stormm::structure::MdlMolProperty
• getExponentFactor() : stormm::energy::LayeredPotentialMetrics
• getExtendedMaskCount() : stormm::energy::ForwardExclusionMask, stormm::synthesis::ForwardExclusionMask
• getExternalDielectric() : stormm::namelist::SolventControls
• getExternalRegistryNumber() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataItem, stormm::structure::MdlMolDataRequest
• getFailedRattleCount() : stormm::review::Watcher
• getFailedShakeCount() : stormm::review::Watcher
• getFailureCount() : stormm::testing::CheckList
• getFeatures() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getFeaturesPointer() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getFFMorphNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getFFMorphPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getFFTStaging() : stormm::energy::PMIGrid
• getFileFusionProtocol() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getFileName() : stormm::chemistry::AtomGraph, stormm::chemistry::CoordinateFrame, stormm::chemistry::PhaseSpace, stormm::data_types::AtomGraph, stormm::diskutil::CoordinateFrame, stormm::diskutil::PhaseSpace, stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::ObjectIdentifier, stormm::docs::TextFile, stormm::energy::AtomGraph, stormm::energy::CoordinateFrame, stormm::energy::PhaseSpace, stormm::mm::AtomGraph, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::CoordinateFrame, stormm::review::TextFile, stormm::stmath::CoordinateFrame, stormm::stmath::PhaseSpace, stormm::structure::AtomGraph, stormm::structure::CoordinateFrame, stormm::structure::PhaseSpace, stormm::structure::TextFile, stormm::synthesis::AtomGraph, stormm::synthesis::CoordinateFrame, stormm::synthesis::PhaseSpace, stormm::synthesis::TextFile, stormm::testing::AtomGraph, stormm::testing::CoordinateFrame, stormm::testing::PhaseSpace, stormm::testing::TextFile, stormm::topology::AtomGraph, stormm::topology::TextFile, stormm::trajectory::AtomGraph, stormm::trajectory::CoordinateFrame, stormm::trajectory::PhaseSpace, stormm::trajectory::TextFile
• getFilesNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getFilesPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getFinalDisplacements() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getFinalEvolutionStep() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getFinalFrame() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getFinalStateCount() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getFinalStep() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getFinalStiffness() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getFinalTargetSite() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getFinalTemperature() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getFinalTemperatureTargets() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getFirstAtom() : stormm::structure::MdlMolBond
• getFirstMatchingSystemIndex() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getFirstSolventAtom() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getFirstSolventMolecule() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getFirstUnassignedAtom() : stormm::synthesis::ValenceDelegator
• getFixedPrecisionBits() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::energy::ImplicitSolventWorkspace, stormm::energy::PMIGrid, stormm::mm::ImplicitSolventWorkspace, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::ImplicitSolventWorkspace, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getForceAccumulationBits() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getForceScalingBits() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getForceScalingFactor() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getForceThreshold() : stormm::review::Watcher
• getForm() : stormm::energy::LayeredPotentialMetrics, stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getFormalCharge() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getFormalChargePrinting() : stormm::structure::Pdb, stormm::synthesis::Pdb, stormm::trajectory::Pdb
• getFormalCharges() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::structure::MdlMol, stormm::synthesis::ChemicalFeatures, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getFormat() : stormm::card::Hybrid< T >, stormm::chemistry::Condensate, stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::Hybrid< T >, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::Hybrid< T >, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::Hybrid< T >, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::CoordinateFrame, stormm::mm::Hybrid< T >, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::review::Hybrid< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::Condensate, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::Hybrid< T >, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::Condensate, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::Hybrid< T >, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::Condensate, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::Hybrid< T >, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::Condensate, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::topology::Hybrid< T >, stormm::trajectory::Condensate, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::Hybrid< T >, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis
• getFormattedAddedPointColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getFormattedBorderColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getFormattedElementColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getFormattedLigandLineColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getFormattedReceptorLineColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getFrameCapacity() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getFrameCount() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getFrameNumber() : stormm::chemistry::CoordinateFrame, stormm::diskutil::CoordinateFrame, stormm::energy::CoordinateFrame, stormm::mm::CoordinateFrame, stormm::namelist::CoordinateFrame, stormm::review::CoordinateFrame, stormm::stmath::CoordinateFrame, stormm::structure::CoordinateFrame, stormm::synthesis::CoordinateFrame, stormm::testing::CoordinateFrame, stormm::trajectory::CoordinateFrame
• getFramesHandle() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getFreeCoordinateName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getFreeCoordinatesCount() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getFreeElectrons() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getFreeTopologyCount() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getFreeTopologyName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getFrequencyOfSwaps() : stormm::namelist::RemdControls
• getFrozenAtomMask() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• getFullAtomName() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getFusedRingCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getGamma() : stormm::namelist::MeshControls
• getGaussianWidth() : stormm::energy::PPITable, stormm::mm::PPPMControls, stormm::namelist::PPPMControls
• getGBScreeningFactor() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getGeneralStrategy() : stormm::structure::RMSDPlan
• getGeneratorCount() : stormm::random::RandomNumberMill< T >
• getGeneratorState() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getGlobalCacheSize() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getGlobalCenter() : stormm::chemistry::IndigoFragment
• getGlobalPositionBits() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getGlobalPosScalingBits() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getGpu() : stormm::card::KernelManager
• getGpuDevice() : stormm::card::HpcConfig
• getGpuInfo() : stormm::card::HpcConfig
• getGpuSupported() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getGrid() : stormm::energy::PMIGrid
• getGridDimensions() : stormm::energy::PMIGrid
• getGroundStateBondOrders() : stormm::chemistry::IndigoTable
• getGroundStateEnergy() : stormm::chemistry::IndigoTable
• getGroundStateFormalCharges() : stormm::chemistry::IndigoTable
• getGroundStateFreeElectrons() : stormm::chemistry::IndigoTable
• getGroup() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupCount() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupDependencies() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupingMethod() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getGroupLevel() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupOrder() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupPointer() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupRule() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getGroupSize() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getHarmonicStiffnessPointer() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getHeaderRowCount() : stormm::namelist::ReportTable, stormm::review::ReportTable
• getHelp() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getHighSpeedCount() : stormm::review::Watcher
• getHighSpeeds() : stormm::review::Watcher
• getHighSpeedStages() : stormm::review::Watcher
• getHighSpeedSteps() : stormm::review::Watcher
• getHighTemperature() : stormm::namelist::RemdControls
• getHydrogenBondAcceptorCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getHydrogenBondAcceptorList() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getHydrogenBondAcceptorMask() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getHydrogenBondDonorCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getHydrogenBondDonorList() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getHydrogenBondDonorMask() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getIgnoredFailureCount() : stormm::testing::CheckList
• getImageIndex() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getImperative() : stormm::namelist::NamelistElement
• getImplicitSolventModel() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::SolventControls, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getImportCount() : stormm::synthesis::NonbondedWorkUnit
• getImportedAtomCount() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getImportedAtomIndex() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getIndexingMethod() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getIndexingOffset() : stormm::energy::LogScaleSpline< T4 >, stormm::energy::PPITable, stormm::stmath::LogScaleSpline< T4 >
• getIndigoTableIndex() : stormm::chemistry::IndigoAtomCenter
• getInertialTensor() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getInertialTensorBitCount() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getInferred14AccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getInferred14Affectors() : stormm::synthesis::ValenceDelegator
• getInferred14Instruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getInferred14Instructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getInitialDisplacements() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getInitialEvolutionStep() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getInitializationMask() : stormm::synthesis::NonbondedWorkUnit
• getInitialMinimizationStep() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getInitialStep() : stormm::mm::MinimizeControls, stormm::namelist::BoundedRestraint, stormm::namelist::MinimizeControls, stormm::restraints::BoundedRestraint
• getInitialStiffness() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getInitialTargetSite() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getInitialTemperature() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getInitialTemperatureTargets() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getInputAsString() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• getInputCoordinateFileKind() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getInputCoordinateFileName() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getInputCoordinatesKind() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getInputCoordinatesName() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getInputFileName() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getInputInstances() : stormm::topology::LennardJonesAnalysis
• getInputKind() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getInputSetParameterCount() : stormm::topology::ParameterUnion< T >
• getInputText() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getInputTranscriptFile() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getInstanceCount() : stormm::docs::ObjectIdentifier
• getIntegerValue() : stormm::structure::MdlMolProperty
• getIntegrationKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getInterlacedCoordinates() : stormm::chemistry::Condensate, stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::Condensate, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::Condensate, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::Condensate, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::Condensate, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::Condensate, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis
• getInternalDielectric() : stormm::namelist::SolventControls
• getInternalRegistryNumber() : stormm::structure::MdlMolDataItem
• getInterpolationOrder() : stormm::energy::PMIGrid, stormm::mm::PPPMControls, stormm::namelist::PPPMControls
• getIntValue() : stormm::display::NamelistEmulator, stormm::namelist::NamelistElement, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getInverseForceScalingFactor() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getInverseScalingFactor() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getInverseTransform() : stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpace, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace
• getInverseTransformHandle() : stormm::chemistry::CoordinateFrame, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateFrame, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateFrame, stormm::energy::PhaseSpace, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::stmath::CoordinateFrame, stormm::stmath::PhaseSpace, stormm::structure::CoordinateFrame, stormm::structure::PhaseSpace, stormm::synthesis::CoordinateFrame, stormm::synthesis::PhaseSpace, stormm::testing::CoordinateFrame, stormm::testing::PhaseSpace, stormm::trajectory::CoordinateFrame, stormm::trajectory::PhaseSpace
• getInverseTransformPointer() : stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::mm::PhaseSpace, stormm::namelist::PhaseSpace, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpace, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace
• getInverseTransforms() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• getInverseTransformsHandle() : stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::CoordinateSeries< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpaceSynthesis
• getInvertibleGroup() : stormm::synthesis::SynthesisPermutor
• getIsosurfaceColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getIsosurfaceCount() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getIsosurfaceDrawingMethod() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getIsosurfaceValue() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getItem() : stormm::review::OrderedList
• getItemCount() : stormm::review::OrderedList
• getItemName() : stormm::structure::MdlMolDataItem
• getKernelName() : stormm::card::KernelFormat
• getKeyword() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getKeywordCount() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getKeywordEntries() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getKeywordKind() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getKeywordStatus() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getKind() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::chemistry::MaskComponent, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::energy::Thermostat, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::mm::Thermostat, stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement, stormm::namelist::MdlMolDataRequest, stormm::namelist::NamelistElement, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::stmath::TricubicStencil, stormm::structure::Hybrid< T >, stormm::structure::MdlMolDataItem, stormm::structure::MdlMolDataRequest, stormm::structure::MdlMolProperty, stormm::structure::TricubicStencil, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Barostat, stormm::trajectory::Hybrid< T >, stormm::trajectory::Thermostat
• getLabel() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::mm::SystemCache, stormm::namelist::MoleculeSystem, stormm::namelist::NamelistElement, stormm::namelist::SceneControls, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::review::SystemCache, stormm::stmath::HpcMatrix< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::structure::SystemCache, stormm::synthesis::Hybrid< T >, stormm::synthesis::MoleculeSystem, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >, stormm::trajectory::SystemCache
• getLabelCacheIndex() : stormm::mm::SynthesisCacheMap, stormm::mm::SystemCache, stormm::review::SynthesisCacheMap, stormm::review::SystemCache, stormm::structure::SynthesisCacheMap, stormm::structure::SystemCache, stormm::synthesis::SynthesisCacheMap, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SynthesisCacheMap, stormm::trajectory::SystemCache
• getLabelCount() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getLabelGroup() : stormm::mm::SynthesisCacheMap, stormm::namelist::ReceptorControls, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getLabelsMatchingTopology() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getLangevinCollisionFrequency() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getLangevinExplicitFactor() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getLangevinFrequency() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getLangevinImplicitFactor() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getLargeForceCount() : stormm::review::Watcher
• getLargeForces() : stormm::review::Watcher
• getLargeForceStages() : stormm::review::Watcher
• getLargeForceSteps() : stormm::review::Watcher
• getLargestMoleculeSize() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLargestResidueSize() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLargestWorkUnitGridPoints() : stormm::energy::PMIGrid
• getLastSoluteAtom() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLastSoluteResidue() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLaunchParameters() : stormm::card::KernelFormat
• getLayer() : stormm::chemistry::BondedNode
• getLayerCount() : stormm::energy::LayeredPotentialMetrics
• getLeft() : stormm::chemistry::TextGuard, stormm::docs::TextGuard, stormm::namelist::TextGuard, stormm::parse::TextGuard, stormm::testing::TextGuard
• getLength() : stormm::synthesis::VolumePartition
• getLengthPlusHalo() : stormm::synthesis::VolumePartition
• getLennardJonesCutoff() : stormm::mm::MinimizeControls, stormm::namelist::MinimizeControls
• getLennardJonesEpsilon() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLennardJonesIndex() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLennardJonesSigma() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getLigandHeavyAtomSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getLigandHighlight() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getLigandLightAtomSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getLigandLineColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getLigandLineWidth() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getLightingMode() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getLineAsString() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getLineCount() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getLineLength() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getLineLimits() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getLinePointer() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getListIndex() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getListOfFilesCreated() : stormm::testing::TestEnvironment
• getLJ14Coefficients() : stormm::topology::LennardJonesAnalysis
• getLJ14Epsilon() : stormm::topology::LennardJonesAnalysis
• getLJ14Parameters() : stormm::topology::LennardJonesAnalysis
• getLJ14Sigma() : stormm::topology::LennardJonesAnalysis
• getLJAliases() : stormm::topology::LennardJonesAnalysis
• getLJCoefficients() : stormm::topology::LennardJonesAnalysis
• getLJEpsilon() : stormm::topology::LennardJonesAnalysis
• getLJParameters() : stormm::topology::LennardJonesAnalysis
• getLJSigma() : stormm::topology::LennardJonesAnalysis
• getLJTypeCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::topology::LennardJonesAnalysis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getLocalPositionBits() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getLocalPosScalingBits() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getLogPermutationCount() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getLogPermutations() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getLongestLineLength() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getLowTemperature() : stormm::namelist::RemdControls
• getMaccsFieldNumber() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataItem, stormm::structure::MdlMolDataRequest
• getMargin() : stormm::chemistry::Approx, stormm::stmath::Approx, stormm::synthesis::Approx, stormm::testing::Approx, stormm::topology::Approx, stormm::trajectory::Approx
• getMask() : stormm::chemistry::AtomMask, stormm::chemistry::MaskComponent, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getMaskedAtomCount() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getMatchingSystemIndices() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getMatrixSize() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getMaxAtomIndex() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getMaxAtoms() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getMaxBlocksPerSMP() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getMaximumBatchDegeneracy() : stormm::energy::TileManager
• getMaximumRange() : stormm::energy::LayeredPotentialMetrics, stormm::energy::LogScaleSpline< T4 >, stormm::energy::PPITable, stormm::stmath::LogScaleSpline< T4 >
• getMaximumSpan() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMaximumTrialLimit() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getMaxReplicas() : stormm::namelist::RemdControls
• getMaxSeedingAttempts() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getMaxSeparation() : stormm::generalized_born_defaults::NeckGeneralizedBornTable
• getMaxSharedPerBlock() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getMaxSharedPerSMP() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getMaxThreadsPerBlock() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getMaxThreadsPerSMP() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getMaxValue() : stormm::generalized_born_defaults::NeckGeneralizedBornTable
• getMdlText() : stormm::structure::MdlMolProperty
• getMeshCellType() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshElementVector() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshElementVectorAsFP() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshElementVectorAsTuple() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshInverseTransform() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshInverseTransformAsFP() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshKernelDims() : stormm::card::MeshKlManager, stormm::structure::MeshKlManager
• getMeshKind() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getMeshLocation() : stormm::structure::MeshRulers
• getMeshOrigin() : stormm::review::MeshParameters, stormm::structure::MeshParameters, stormm::structure::MeshRulers
• getMeshOriginAsFP() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshOriginAsTuple() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMeshPosition() : stormm::namelist::ReceptorControls
• getMeshSubdivisions() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::PPPMControls, stormm::namelist::PPPMControls, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getMeshTransform() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getMessage() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
• getMigrationKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getMinAtomIndex() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getMinimizeNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getMinimizePresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getMinimumDistance() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• getMinimumRange() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getMinimumSigmaRatio() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• getMixingRule() : stormm::energy::LayeredPotentialMetrics
• getMode() : stormm::chemistry::Condensate, stormm::energy::LocalExclusionMask, stormm::energy::PMIGrid, stormm::mm::LocalExclusionMask, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
• getModelCount() : stormm::structure::Pdb, stormm::synthesis::Pdb, stormm::trajectory::Pdb
• getModelEdit() : stormm::namelist::FFMorphControls
• getMolecularBasis() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >, stormm::structure::BackgroundMeshComposition< T >
• getMoleculeContents() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getMoleculeCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::topology::AtomGraphStage, stormm::trajectory::AtomGraph
• getMoleculeKind() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getMoleculeLimits() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getMoleculeMembership() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getMomentumBitCount() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getMostPrevalentCombiningRule() : stormm::topology::LennardJonesAnalysis
• getMotion() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getMovedAtomCount() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getMoveFactor() : stormm::mm::LineMinimization
• getMoveLength() : stormm::mm::LineMinimization
• getMovingAtom() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getMovingAtomCount() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getMovingAtoms() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getMovingAtomWeight() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getMutableRingCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getNamelistPointer() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• getNameOfAtom() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getNameOfResidue() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getNestedItem() : stormm::review::OrderedList
• getNestedItemCount() : stormm::review::OrderedList
• getNetCharge() : stormm::chemistry::IndigoTable
• getNetVelocity() : stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getNeutralTerritoryStencil() : stormm::energy::TileManager
• getNonbonded11Exclusions() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getNonbonded12Exclusions() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getNonbonded13Exclusions() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getNonbonded14Exclusions() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getNonbondedKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getNonbondedKit() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getNonbondedMethod() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getNonbondedPotential() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getNonbondedWorkType() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getNonbondedWorkUnitCount() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getNonbondedWorkUnitProgress() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getNonrigidParticleCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getNTWarpMultiplicity() : stormm::energy::MolecularMechanicsControls, stormm::mm::DynamicsControls, stormm::mm::MolecularMechanicsControls, stormm::namelist::DynamicsControls, stormm::stmath::MolecularMechanicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::MolecularMechanicsControls
• getOcclusionPenalty() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getOperator() : stormm::chemistry::MaskComponent
• getOptimizationDepth() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getOrder() : stormm::namelist::BoundedRestraint, stormm::namelist::RestraintControls, stormm::restraints::BoundedRestraint, stormm::structure::MdlMolBond, stormm::synthesis::RestraintControls
• getOrganicAtomCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getOrganicMoleculeCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getOrigin() : stormm::namelist::MeshControls, stormm::synthesis::VolumePartition
• getOutlierCount() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getOutlierSigmaFactor() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getOutputCoordinateFormat() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getOutputFile() : stormm::topology::AtomGraphStage
• getOutputFileName() : stormm::review::SectionContents
• getOutputItemName() : stormm::structure::MdlMolDataItem
• getOutputScope() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getOutputSyntax() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getOverallFailureCount() : stormm::testing::CheckList
• getOverallGpuCount() : stormm::card::HpcConfig
• getOverallSkipCount() : stormm::testing::CheckList
• getPaddedAtomCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::AtomGraphSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::AtomGraphSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraphSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::AtomGraphSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getPaddedConstraintInstructionCount() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getPadding() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getParameters() : stormm::energy::LayeredPotential< T, T4 >
• getPartialCharge() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getPartialCharges() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getParticleMeshEwaldMethod() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getParticlesPerMolecule() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getPartitionConstrainedDoF() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getPartitionCount() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getPartitionFreeDoF() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getPartitionMap() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getPartitionTarget() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getPartner() : stormm::chemistry::IndigoAtomCenter
• getPartnerCount() : stormm::chemistry::IndigoAtomCenter
• getPBRadiiSet() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::SolventControls, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getPeriodicity() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getPermutorMapIndex() : stormm::synthesis::SynthesisPermutor
• getPermutorSetCount() : stormm::synthesis::SynthesisPermutor
• getPhaseAngle() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getPivotAtom() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getPivotHandle() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getPlanarAtomCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getPlanCount() : stormm::structure::RMSDPlan
• getPlanIndex() : stormm::structure::RMSDPlan
• getPMEPairsKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getPmeValenceKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getPmeWorkUnitProgress() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getPMIGridPointer() : stormm::energy::ConvolutionManager
• getPointer() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::mm::ReductionBridge, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::stmath::ReductionBridge, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• getPointerIndex() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• getPolarHydrogenCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getPolarHydrogenList() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getPolarHydrogenMask() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getPolicy() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getPosition() : stormm::namelist::MeshControls
• getPositionalRestraintAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getPositionalRestraintAffectors() : stormm::synthesis::ValenceDelegator
• getPositionalRestraintCount() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getPositionalRestraintInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getPositionalRestraintInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getPositionScalingBits() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getPossibleStates() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getPotential() : stormm::namelist::MeshControls
• getPPPMNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getPPPMPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getPrecisionNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getPrecisionPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getPreviousAtom() : stormm::chemistry::BondedNode
• getPreviousNode() : stormm::chemistry::BondedNode
• getPrimaryMask() : stormm::energy::ForwardExclusionMask, stormm::synthesis::ForwardExclusionMask
• getPrimaryMaskCount() : stormm::energy::ForwardExclusionMask, stormm::synthesis::ForwardExclusionMask
• getPrimaryTopologyRule() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getPrintedSubstrate() : stormm::structure::MdlMolProperty
• getPrintingPolicy() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getPrintingProtocol() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getProbeRadius() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getProductionStride() : stormm::namelist::RandomControls
• getProfile() : stormm::energy::LocalExclusionMask, stormm::mm::LocalExclusionMask
• getProfileCount() : stormm::energy::LocalExclusionMask, stormm::mm::LocalExclusionMask
• getPropertiesCount() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getQualifyingSystems() : stormm::testing::TestSystemManager
• getRandomCacheDepth() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::Thermostat, stormm::mm::AtomGraphSynthesis, stormm::mm::Thermostat, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::Thermostat
• getRandomNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getRandomPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getRandomSeed() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::namelist::RandomControls, stormm::testing::TestEnvironment, stormm::trajectory::Thermostat
• getRangeCompounding() : stormm::energy::LayeredPotentialMetrics
• getRankPartners() : stormm::chemistry::AtomRank
• getRanks() : stormm::chemistry::AtomRank
• getRattleFailures() : stormm::review::Watcher
• getRattleIterations() : stormm::energy::Thermostat, stormm::mm::DynamicsControls, stormm::mm::Thermostat, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::Thermostat
• getRattleTolerance() : stormm::energy::Thermostat, stormm::mm::DynamicsControls, stormm::mm::Thermostat, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::Thermostat
• getRattleViolations() : stormm::review::Watcher
• getRawMask() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getRdwuPerSystem() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getReactivity() : stormm::structure::MdlMolBond
• getReadAssignments() : stormm::energy::TileManager
• getReadyFrameCount() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• getRealLocation() : stormm::structure::MeshRulers
• getRealMovingAtomCount() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getRealValue() : stormm::display::NamelistEmulator, stormm::namelist::NamelistElement, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getReceptorHeavyAtomSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getReceptorHighlight() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getReceptorLightAtomSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getReceptorLineColor() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getReceptorLineWidth() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getReceptorNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getRecommendation() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getRecommendedMappingMethod() : stormm::energy::PMIGrid
• getReductionKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getReductionPreparations() : stormm::energy::TileManager
• getReductionWorkUnitAbstracts() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getReductionWorkUnitCount() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getReductionWorkUnitProgress() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getReferenceNonbondedKit() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getRefreshStride() : stormm::random::RandomNumberMill< T >
• getRegistersPerBlock() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getRegistersPerSMP() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getRegisterUsage() : stormm::card::KernelFormat
• getRelevantBond() : stormm::chemistry::IndigoAtomCenter
• getRemdNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getRemdPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getRemdType() : stormm::namelist::RemdControls
• getRepeatableValueState() : stormm::namelist::NamelistElement
• getReplicaCount() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem, stormm::synthesis::SynthesisPermutor
• getReportCount() : stormm::review::Watcher
• getReportedQuantities() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getReportedQuantityCount() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getReportFile() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getReportFileWidth() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getReportNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getReportPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getReportVariable() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getRequiredMassFraction() : stormm::structure::RMSDPlan
• getResidueCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::topology::AtomGraphStage, stormm::trajectory::AtomGraph
• getResidueIndex() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getResidueLimits() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getResidueName() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getResidueNumber() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getRestraint() : stormm::namelist::RestraintControls, stormm::synthesis::RestraintControls
• getRestraintApparatusPointer() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceDelegator, stormm::synthesis::ValenceWorkUnit
• getRestraintCount() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getRestraintList() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getRestraintNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getRestraintPointer() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getRestraints() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getResultIndex() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit
• getReturnType() : stormm::docs::ObjectIdentifier
• getReturnTypeCount() : stormm::docs::ObjectIdentifier
• getRho() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getRight() : stormm::chemistry::TextGuard, stormm::docs::TextGuard, stormm::namelist::TextGuard, stormm::parse::TextGuard, stormm::testing::TextGuard
• getRigidWaterAtomCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getRigidWaterCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getRingCompletion() : stormm::chemistry::BondedNode
• getRingCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getRingInclusion() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getRingMask() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getRingStatus() : stormm::structure::MdlMolBond
• getRMSDKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getRMSDTolerance() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getRootAtom() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getRootBondOrder() : stormm::chemistry::BondedNode
• getRootHandle() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• getRotatableBondCount() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures, stormm::synthesis::SynthesisPermutor
• getRotatableBondGroups() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getRotatableBondLimit() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getRotatableBondSampleCount() : stormm::synthesis::SynthesisPermutor
• getRotatableBondSnapThreshold() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getRotatableGroup() : stormm::synthesis::SynthesisPermutor
• getRotationSampleCount() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getRotationSampleValues() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getRulers() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getRunningStateCount() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getSaltConcentration() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::SolventControls, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getSampleCapacity() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• getSampleSize() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• getSamplingIntensity() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getSamplingTrialLimit() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getScalingBits() : stormm::namelist::MeshControls, stormm::review::MeshParameters, stormm::structure::MeshParameters
• getScalingFactor() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getScore() : stormm::chemistry::IndigoAtomCenter, stormm::chemistry::IndigoFragment
• getSDFileDataRequest() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getSDFileDataRequestCount() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getSDFileDataRequests() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getSdfModificationPolicy() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getSdfNotifications() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getSecondaryMaskCount() : stormm::energy::ForwardExclusionMask, stormm::energy::LocalExclusionMask, stormm::mm::LocalExclusionMask, stormm::synthesis::ForwardExclusionMask
• getSecondaryMasks() : stormm::energy::ForwardExclusionMask, stormm::energy::LocalExclusionMask, stormm::mm::LocalExclusionMask, stormm::synthesis::ForwardExclusionMask
• getSecondaryMaskView() : stormm::energy::LocalExclusionMask, stormm::mm::LocalExclusionMask
• getSecondaryTopologyRule() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• getSecondAtom() : stormm::structure::MdlMolBond
• getSectionIndex() : stormm::testing::CheckList
• getSectionName() : stormm::testing::CheckList
• getSegments() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• getSelfAssignments() : stormm::energy::TileManager
• getSelfEcorr() : stormm::energy::ConvolutionManager
• getSelfPointer() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::chemistry::ChemicalFeatures, stormm::chemistry::Condensate, stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::data_types::AtomGraph, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::display::NamelistEmulator, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::LogScaleSpline< T4 >, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::energy::PMIGrid, stormm::energy::RestraintApparatus, stormm::energy::ScoreCard, stormm::energy::StaticExclusionMask, stormm::energy::Thermostat, stormm::generalized_born_defaults::NeckGeneralizedBornTable, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::mm::RestraintApparatus, stormm::mm::ScoreCard, stormm::mm::StaticExclusionMask, stormm::mm::SynthesisCacheMap, stormm::mm::SystemCache, stormm::mm::Thermostat, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::ChemicalFeatures, stormm::namelist::CoordinateFrame, stormm::namelist::NamelistEmulator, stormm::namelist::PhaseSpace, stormm::namelist::RenderOptions, stormm::restraints::AtomGraph, stormm::restraints::ChemicalFeatures, stormm::restraints::RestraintApparatus, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::review::MeshParameters, stormm::review::PhaseSpaceSynthesis, stormm::review::RenderOptions, stormm::review::ScoreCard, stormm::review::SynthesisCacheMap, stormm::review::SystemCache, stormm::stmath::AtomGraphSynthesis, stormm::stmath::Condensate, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::LogScaleSpline< T4 >, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::structure::ChemicalFeatures, stormm::structure::Condensate, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::MdlMol, stormm::structure::MeshParameters, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::structure::RestraintApparatus, stormm::structure::ScoreCard, stormm::structure::StaticExclusionMask, stormm::structure::SynthesisCacheMap, stormm::structure::SystemCache, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::ChemicalFeatures, stormm::synthesis::Condensate, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::MdlMol, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::synthesis::RestraintApparatus, stormm::synthesis::ScoreCard, stormm::synthesis::StaticExclusionMask, stormm::synthesis::SynthesisCacheMap, stormm::synthesis::SystemCache, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::testing::Condensate, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::MdlMol, stormm::testing::NamelistEmulator, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::testing::SystemCache, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::topology::MdlMol, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::Condensate, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis, stormm::trajectory::SynthesisCacheMap, stormm::trajectory::SystemCache, stormm::trajectory::Thermostat
• getSelfPreparations() : stormm::energy::TileManager
• getSendingAtomLayout() : stormm::energy::TileManager
• getSerialNumber() : stormm::card::Hybrid< T >, stormm::card::Ledger, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• getSeriesPointer() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
• getSetCorrespondence() : stormm::topology::LennardJonesAnalysis
• getSetCount() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel, stormm::topology::LennardJonesAnalysis
• getSettings() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getSettleGroupAffectors() : stormm::synthesis::ValenceDelegator
• getSettleGroupCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getSettleGroupInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getSettleGroupInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getShakeFailures() : stormm::review::Watcher
• getShakeViolations() : stormm::review::Watcher
• getSharedFixedPrecisionBits() : stormm::energy::PMIGrid
• getSharedMemoryRequirement() : stormm::card::KernelFormat
• getSigma() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getSimpleTaskList() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getSinglePrecisionAtomUpdateKit() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getSinglePrecisionConstraintKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getSinglePrecisionImplicitSolventKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getSinglePrecisionNonbondedKit() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getSinglePrecisionRestraintKit() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getSinglePrecisionValenceKit() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getSinglePrecisionVirtualSiteKit() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getSkipCount() : stormm::testing::CheckList
• getSmoothingCoefficients() : stormm::energy::LayeredPotential< T, T4 >
• getSMPCount() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails
• getSolventNamelistInfo() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getSolventPresence() : stormm::namelist::UserSettings, stormm::review::UserSettings
• getSourceGroup() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getSpacing() : stormm::namelist::MeshControls
• getSpan() : stormm::chemistry::TextGuard, stormm::docs::TextGuard, stormm::namelist::TextGuard, stormm::parse::TextGuard, stormm::testing::TextGuard
• getSpeedThreshold() : stormm::review::Watcher
• getSplinedDerivative() : stormm::energy::LayeredPotential< T, T4 >
• getSplineDensity() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getSplinedValue() : stormm::energy::LayeredPotential< T, T4 >
• getSplineIndex() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getSplineIndexByRealArg() : stormm::energy::LogScaleSpline< T4 >, stormm::stmath::LogScaleSpline< T4 >
• getStartDate() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getStartingFrame() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getState() : stormm::chemistry::IndigoAtomCenter, stormm::chemistry::IndigoFragment, stormm::reporting::ProgressBar, stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getStateCount() : stormm::chemistry::IndigoAtomCenter, stormm::chemistry::IndigoFragment
• getStateLimits() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getStatesBearingCharge() : stormm::chemistry::IndigoFragment
• getStateTracker() : stormm::synthesis::SynthesisPermutor
• getSteepestDescentCycles() : stormm::energy::MolecularMechanicsControls, stormm::mm::MinimizeControls, stormm::mm::MolecularMechanicsControls, stormm::namelist::MinimizeControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getStencilKind() : stormm::review::MeshParameters, stormm::structure::MeshParameters
• getStepCount() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getStepNumber() : stormm::energy::MolecularMechanicsControls, stormm::energy::Thermostat, stormm::mm::MolecularMechanicsControls, stormm::mm::Thermostat, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls, stormm::trajectory::Thermostat
• getStereochemistry() : stormm::structure::MdlMolBond
• getStiffness() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getStiffnessConstant() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getStorageHandle() : stormm::chemistry::CoordinateFrame, stormm::chemistry::PhaseSpace, stormm::diskutil::CoordinateFrame, stormm::diskutil::PhaseSpace, stormm::energy::CoordinateFrame, stormm::energy::PhaseSpace, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::review::CoordinateFrame, stormm::stmath::CoordinateFrame, stormm::stmath::PhaseSpace, stormm::structure::CoordinateFrame, stormm::structure::PhaseSpace, stormm::synthesis::CoordinateFrame, stormm::synthesis::PhaseSpace, stormm::testing::CoordinateFrame, stormm::testing::PhaseSpace, stormm::trajectory::CoordinateFrame, stormm::trajectory::PhaseSpace
• getStormmHomePath() : stormm::testing::TestEnvironment
• getStormmSourcePath() : stormm::testing::TestEnvironment
• getStrategy() : stormm::mm::PPPMControls, stormm::namelist::PPPMControls
• getStreamCount() : stormm::namelist::RandomControls
• getStringValue() : stormm::display::NamelistEmulator, stormm::namelist::NamelistElement, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getStructuralAtomNumber() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getStructureCount() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getStructureDataEntry() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getStructureDataEntryPointer() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getStyle() : stormm::chemistry::Approx, stormm::stmath::Approx, stormm::synthesis::Approx, stormm::testing::Approx, stormm::topology::Approx, stormm::trajectory::Approx
• getSubKeyCount() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• getSubLabel() : stormm::namelist::NamelistElement
• getSubstrate() : stormm::structure::MdlMolProperty
• getSuccessCount() : stormm::testing::CheckList
• getSuperTileStrideCount() : stormm::energy::StaticExclusionMask, stormm::mm::StaticExclusionMask, stormm::structure::StaticExclusionMask, stormm::synthesis::StaticExclusionMask
• getSupportedGpuCount() : stormm::card::HpcConfig
• getSurfaceAreaScalingFactor() : stormm::namelist::SolventControls
• getSurfaceDimensions() : stormm::topology::CmapSurfaceUnion
• getSurfaceIndices() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getSurfaceValues() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getSwapStore() : stormm::namelist::RemdControls
• getSymmetryDepth() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getSymmetryRelatedAtom() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• getSyntax() : stormm::review::SectionContents
• getSynthesisMapPointer() : stormm::structure::RMSDPlan
• getSynthesisPointer() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::synthesis::SynthesisPermutor, stormm::testing::Condensate, stormm::trajectory::Condensate
• getSynthesisSystemCount() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getSynthesisTopologyCount() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getSystem() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getSystemAtomCounts() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getSystemAtomOffsets() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getSystemCacheIndex() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getSystemChiralCenterCount() : stormm::synthesis::SynthesisPermutor
• getSystemCisTransBondCount() : stormm::synthesis::SynthesisPermutor
• getSystemCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::Condensate, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::Brickwork, stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::ConvolutionManager, stormm::energy::PhaseSpaceSynthesis, stormm::energy::PMIGrid, stormm::energy::ScoreCard, stormm::energy::StaticExclusionMaskSynthesis, stormm::mm::AtomGraphSynthesis, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::LineMinimization, stormm::mm::MotionSweeper, stormm::mm::PhaseSpaceSynthesis, stormm::mm::ScoreCard, stormm::mm::StaticExclusionMaskSynthesis, stormm::mm::SystemCache, stormm::review::AtomGraphSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::review::ScoreCard, stormm::review::SystemCache, stormm::review::Watcher, stormm::stmath::AtomGraphSynthesis, stormm::stmath::Condensate, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraphSynthesis, stormm::structure::Condensate, stormm::structure::PhaseSpaceSynthesis, stormm::structure::ScoreCard, stormm::structure::SystemCache, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::Brickwork, stormm::synthesis::Condensate, stormm::synthesis::PhaseSpaceSynthesis, stormm::synthesis::ScoreCard, stormm::synthesis::StaticExclusionMaskSynthesis, stormm::synthesis::SynthesisPermutor, stormm::synthesis::SystemCache, stormm::testing::AtomGraphSynthesis, stormm::testing::Condensate, stormm::testing::PhaseSpaceSynthesis, stormm::testing::SystemCache, stormm::testing::TestSystemManager, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::Condensate, stormm::trajectory::MotionSweeper, stormm::trajectory::PhaseSpaceSynthesis, stormm::trajectory::SystemCache
• getSystemDefinitionCount() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getSystemDimensions() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getSystemExampleIndex() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemForwardMask() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemForwardMaskPointer() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemIndex() : stormm::stmath::ReductionWorkUnit, stormm::synthesis::ReductionWorkUnit, stormm::synthesis::VolumePartition
• getSystemIndicesByTopology() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getSystemLabel() : stormm::mm::SystemCache, stormm::namelist::MdlMolDataRequest, stormm::namelist::RestraintControls, stormm::review::SystemCache, stormm::structure::MdlMolDataRequest, stormm::structure::SystemCache, stormm::synthesis::RestraintControls, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemLabelIndex() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemMembership() : stormm::energy::Brickwork, stormm::synthesis::Brickwork
• getSystemRestraintPointer() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getSystemRotatableBondCount() : stormm::synthesis::SynthesisPermutor
• getSystemStaticMask() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemStaticMaskPointer() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemTopology() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemTopologyIndex() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getSystemTopologyPointer() : stormm::card::AtomGraphSynthesis, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::AtomGraphSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::mm::SystemCache, stormm::review::AtomGraphSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::review::SystemCache, stormm::stmath::AtomGraphSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraphSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::structure::SystemCache, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::synthesis::SystemCache, stormm::testing::AtomGraphSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::testing::SystemCache, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::PhaseSpaceSynthesis, stormm::trajectory::SystemCache
• getTableIndex() : stormm::energy::PPITable
• getTableIndexByRealArg() : stormm::energy::PPITable
• getTableWidth() : stormm::namelist::ReportTable, stormm::review::ReportTable
• getTargetSerialNumber() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• getTargetSite() : stormm::namelist::BoundedRestraint, stormm::restraints::BoundedRestraint
• getTaskCounts() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getTemperatureDistributionMethod() : stormm::namelist::RemdControls
• getTemperatureSpread() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• getTemplateFreeCellGridReader() : stormm::energy::PMIGrid
• getTemplateSize() : stormm::namelist::NamelistElement
• getTemporaryDirectoryAccess() : stormm::testing::TestEnvironment
• getTemporaryDirectoryPath() : stormm::testing::TestEnvironment
• getTerminationRequirement() : stormm::chemistry::TextGuard, stormm::docs::TextGuard, stormm::namelist::TextGuard, stormm::parse::TextGuard, stormm::testing::TextGuard
• getTestingStatus() : stormm::testing::TestSystemManager
• getText() : stormm::chemistry::MaskComponent
• getTextLimits() : stormm::chemistry::MaskComponent
• getTextPointer() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getTextSize() : stormm::diskutil::TextFile, stormm::display::TextFile, stormm::docs::TextFile, stormm::namelist::TextFile, stormm::parse::TextFile, stormm::review::TextFile, stormm::structure::TextFile, stormm::synthesis::TextFile, stormm::testing::TextFile, stormm::topology::TextFile, stormm::trajectory::TextFile
• getTheme() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::PMIGrid, stormm::energy::PPITable, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::PPPMControls, stormm::namelist::PPPMControls, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getThermostatCacheConfig() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatCacheDepth() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatEvolutionEnd() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatEvolutionStart() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatKind() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatLabelIndices() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatLabels() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatLayerCount() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatMasks() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThermostatSeed() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getThreadScalings() : stormm::energy::TileManager
• getTileCount() : stormm::synthesis::NonbondedWorkUnit
• getTileExclusions() : stormm::energy::StaticExclusionMask, stormm::mm::StaticExclusionMask, stormm::structure::StaticExclusionMask, stormm::synthesis::StaticExclusionMask
• getTileInstructions() : stormm::synthesis::NonbondedWorkUnit
• getTileLimits() : stormm::synthesis::NonbondedWorkUnit
• getTileStrideCount() : stormm::energy::StaticExclusionMask, stormm::mm::StaticExclusionMask, stormm::structure::StaticExclusionMask, stormm::synthesis::StaticExclusionMask
• getTimeAtLastTest() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getTimeAtStart() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getTimeDependence() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getTimeSinceLastTest() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getTimeSinceStart() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getTimeStep() : stormm::energy::ScoreCard, stormm::energy::Thermostat, stormm::mm::DynamicsControls, stormm::mm::ScoreCard, stormm::mm::Thermostat, stormm::namelist::DynamicsControls, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::DynamicsControls, stormm::synthesis::ScoreCard, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::Thermostat
• getTinyBoxPresence() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getTitle() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::display::NamelistEmulator, stormm::display::NamelistToken, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::MdlMolDataRequest, stormm::namelist::NamelistEmulator, stormm::namelist::NamelistToken, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::structure::MdlMol, stormm::structure::MdlMolDataRequest, stormm::synthesis::AtomGraph, stormm::synthesis::MdlMol, stormm::testing::AtomGraph, stormm::testing::MdlMol, stormm::testing::NamelistEmulator, stormm::topology::AtomGraph, stormm::topology::AtomGraphStage, stormm::topology::MdlMol, stormm::trajectory::AtomGraph
• getTolerance() : stormm::namelist::RemdControls, stormm::testing::TestEnvironment
• getTopologicalCases() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTopologiesMatchingLabel() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTopology() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTopologyBasePath() : stormm::testing::TestSystemManager
• getTopologyCacheIndex() : stormm::mm::SynthesisCacheMap, stormm::mm::SystemCache, stormm::review::SynthesisCacheMap, stormm::review::SystemCache, stormm::structure::SynthesisCacheMap, stormm::structure::SystemCache, stormm::synthesis::SynthesisCacheMap, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SynthesisCacheMap, stormm::trajectory::SystemCache
• getTopologyCaseCount() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTopologyCount() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTopologyExtension() : stormm::testing::TestSystemManager
• getTopologyFile() : stormm::testing::TestSystemManager
• getTopologyFileName() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getTopologyGroup() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getTopologyIndices() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getTopologyInstanceCount() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getTopologyPointer() : stormm::chemistry::AtomEquivalence, stormm::chemistry::AtomMask, stormm::chemistry::ChemicalFeatures, stormm::energy::LocalExclusionMask, stormm::energy::RestraintApparatus, stormm::energy::StaticExclusionMask, stormm::energy::ValenceWorkUnit, stormm::mm::LocalExclusionMask, stormm::mm::RestraintApparatus, stormm::mm::StaticExclusionMask, stormm::mm::SystemCache, stormm::namelist::AtomMask, stormm::namelist::BoundedRestraint, stormm::namelist::ChemicalFeatures, stormm::restraints::AtomMask, stormm::restraints::BoundedRestraint, stormm::restraints::ChemicalFeatures, stormm::restraints::RestraintApparatus, stormm::review::BackgroundMesh< T >, stormm::review::MeshFoundation, stormm::review::SystemCache, stormm::structure::AtomEquivalence, stormm::structure::AtomMask, stormm::structure::BackgroundMesh< T >, stormm::structure::ChemicalFeatures, stormm::structure::ClashReport, stormm::structure::MeshFoundation, stormm::structure::RestraintApparatus, stormm::structure::RMSDPlan, stormm::structure::StaticExclusionMask, stormm::structure::SystemCache, stormm::synthesis::ChemicalFeatures, stormm::synthesis::ClashReport, stormm::synthesis::RestraintApparatus, stormm::synthesis::StaticExclusionMask, stormm::synthesis::SystemCache, stormm::synthesis::ValenceDelegator, stormm::synthesis::ValenceWorkUnit, stormm::testing::SystemCache, stormm::testing::TestSystemManager, stormm::trajectory::SystemCache
• getTopologyReference() : stormm::testing::TestSystemManager
• getTopologySynthesisPointer() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::energy::ConvolutionManager, stormm::energy::LocalExclusionMask, stormm::energy::PMIGrid, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::LocalExclusionMask, stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::SynthesisCacheMap
• getTorsionAdjustmentProtocol() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• getTorsionKind() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getTotalCapacity() : stormm::energy::PMIGrid
• getTotalCellCount() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getTotalCycles() : stormm::energy::MolecularMechanicsControls, stormm::mm::MinimizeControls, stormm::mm::MolecularMechanicsControls, stormm::namelist::MinimizeControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getTotalDecoupled() : stormm::card::Ledger
• getTotalDevcOnly() : stormm::card::Ledger
• getTotalDuration() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• getTotalExclusions() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getTotalExclusionsCount() : stormm::energy::ForwardExclusionMask, stormm::synthesis::ForwardExclusionMask
• getTotalExpedited() : stormm::card::Ledger
• getTotalFrames() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getTotalHostMounted() : stormm::card::Ledger
• getTotalHostOnly() : stormm::card::Ledger
• getTotalMass() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getTotalOnGrid() : stormm::energy::PMIGrid
• getTotalProjection() : stormm::mm::SynthesisCacheMap, stormm::review::SynthesisCacheMap, stormm::structure::SynthesisCacheMap, stormm::synthesis::SynthesisCacheMap, stormm::trajectory::SynthesisCacheMap
• getTotalRestraintCount() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• getTotalSwapCount() : stormm::namelist::RemdControls
• getTotalUnified() : stormm::card::Ledger
• getTrackedState() : stormm::structure::MdlMol, stormm::structure::MdlMolDataItem, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• getTrajectoryFileKind() : stormm::namelist::MoleculeSystem, stormm::synthesis::MoleculeSystem
• getTrajectoryFileName() : stormm::namelist::FilesControls, stormm::namelist::MoleculeSystem, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::synthesis::MoleculeSystem, stormm::testing::FilesControls
• getTrajectoryFusionProtocol() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTrajectoryKind() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTrajectoryName() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getTrajectoryPrintFrequency() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getTranscript() : stormm::mm::DynamicsControls, stormm::mm::MinimizeControls, stormm::mm::PrecisionControls, stormm::namelist::ConformerControls, stormm::namelist::DynamicsControls, stormm::namelist::FFMorphControls, stormm::namelist::FilesControls, stormm::namelist::MeshControls, stormm::namelist::MinimizeControls, stormm::namelist::PrecisionControls, stormm::namelist::RandomControls, stormm::namelist::ReceptorControls, stormm::namelist::RemdControls, stormm::namelist::ReportControls, stormm::namelist::RestraintControls, stormm::namelist::SolventControls, stormm::review::FilesControls, stormm::review::ReportControls, stormm::structure::ReportControls, stormm::synthesis::ConformerControls, stormm::synthesis::DynamicsControls, stormm::synthesis::FilesControls, stormm::synthesis::RestraintControls, stormm::testing::DynamicsControls, stormm::testing::FilesControls, stormm::trajectory::DynamicsControls
• getTypeOfAtom() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getUnion() : stormm::topology::ParameterUnion< T >
• getUniqueParameterCount() : stormm::topology::ParameterUnion< T >
• getUniqueStaticMaskPointers() : stormm::mm::SystemCache, stormm::review::SystemCache, stormm::structure::SystemCache, stormm::synthesis::SystemCache, stormm::testing::SystemCache, stormm::trajectory::SystemCache
• getUniqueSuperTileCount() : stormm::energy::StaticExclusionMask, stormm::mm::StaticExclusionMask, stormm::structure::StaticExclusionMask, stormm::synthesis::StaticExclusionMask
• getUniqueSurfaceCount() : stormm::topology::CmapSurfaceUnion
• getUniqueTileCount() : stormm::energy::StaticExclusionMask, stormm::mm::StaticExclusionMask, stormm::structure::StaticExclusionMask, stormm::synthesis::StaticExclusionMask
• getUniqueTopologies() : stormm::card::AtomGraphSynthesis, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::AtomGraphSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::AtomGraphSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraphSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::AtomGraphSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getUniqueTopologyCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraphSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::AtomGraphSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::AtomGraphSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraphSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::AtomGraphSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getUniqueTopologyExampleIndices() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getUniqueTopologyIndex() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getUniqueTopologyIndices() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getUnitCellTransforms() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• getUnitCellType() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::chemistry::CoordinateFrame, stormm::chemistry::CoordinateSeries< T >, stormm::chemistry::PhaseSpace, stormm::chemistry::PhaseSpaceSynthesis, stormm::data_types::AtomGraph, stormm::diskutil::CoordinateFrame, stormm::diskutil::CoordinateSeries< T >, stormm::diskutil::PhaseSpace, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::energy::CoordinateFrame, stormm::energy::CoordinateSeries< T >, stormm::energy::PhaseSpace, stormm::energy::PhaseSpaceSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::mm::CoordinateFrame, stormm::mm::PhaseSpace, stormm::mm::PhaseSpaceSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::namelist::CoordinateFrame, stormm::namelist::PhaseSpace, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::review::CoordinateFrame, stormm::review::CoordinateSeries< T >, stormm::review::PhaseSpaceSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::stmath::CoordinateFrame, stormm::stmath::CoordinateSeries< T >, stormm::stmath::PhaseSpace, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::structure::CoordinateFrame, stormm::structure::CoordinateSeries< T >, stormm::structure::PhaseSpace, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::synthesis::CoordinateFrame, stormm::synthesis::CoordinateSeries< T >, stormm::synthesis::PhaseSpace, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::testing::CoordinateFrame, stormm::testing::CoordinateSeries< T >, stormm::testing::PhaseSpace, stormm::testing::PhaseSpaceSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis, stormm::trajectory::CoordinateFrame, stormm::trajectory::CoordinateSeries< T >, stormm::trajectory::PhaseSpace, stormm::trajectory::PhaseSpaceSynthesis
• getUnitCellVectors() : stormm::energy::LayeredPotentialMetrics
• getUpdatedAtomCount() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getUpdateDependencies() : stormm::synthesis::ValenceDelegator
• getUpdateWorkUnit() : stormm::synthesis::ValenceDelegator
• getUreyBradleyAccumulatorWorkUnit() : stormm::synthesis::ValenceDelegator
• getUreyBradleyAffectors() : stormm::synthesis::ValenceDelegator
• getUreyBradleyParameterCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getUreyBradleyTerm() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getUreyBradleyTermCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getUsername() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::ReportControls
• getValenceKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getValenceMethod() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getValenceParameter() : stormm::namelist::MdlMolDataRequest, stormm::structure::MdlMolDataRequest
• getValenceThreadBlockSize() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getValenceWorkUnitAbstracts() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getValenceWorkUnitCount() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getValenceWorkUnitProgress() : stormm::energy::MolecularMechanicsControls, stormm::mm::MolecularMechanicsControls, stormm::stmath::MolecularMechanicsControls, stormm::trajectory::MolecularMechanicsControls
• getValenceWorkUnitSize() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• getValue() : stormm::chemistry::Approx, stormm::namelist::ReportTable, stormm::review::ReportTable, stormm::stmath::Approx, stormm::synthesis::Approx, stormm::testing::Approx, stormm::topology::Approx, stormm::trajectory::Approx
• getValues() : stormm::chemistry::Approx, stormm::stmath::Approx, stormm::synthesis::Approx, stormm::testing::Approx, stormm::topology::Approx, stormm::trajectory::Approx
• getVanDerWaals14Screening() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::topology::AtomGraphStage, stormm::trajectory::AtomGraph
• getVanDerWaalsCutoff() : stormm::energy::MolecularMechanicsControls, stormm::mm::DynamicsControls, stormm::mm::MolecularMechanicsControls, stormm::namelist::DynamicsControls, stormm::stmath::MolecularMechanicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::MolecularMechanicsControls
• getVanDerWaalsScaling() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• getVariableCount() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• getVariableElementCount() : stormm::synthesis::SynthesisPermutor
• getVdw14Screening() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getVdwClashRatio() : stormm::mm::MinimizeControls, stormm::namelist::MeshControls, stormm::namelist::MinimizeControls
• getVdwSummation() : stormm::mm::DynamicsControls, stormm::mm::MinimizeControls, stormm::mm::PPPMControls, stormm::namelist::DynamicsControls, stormm::namelist::MinimizeControls, stormm::namelist::PPPMControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• getVdwTransitionIntensity() : stormm::energy::LayeredPotentialMetrics
• getVdwTransitionMidpoint() : stormm::energy::LayeredPotentialMetrics
• getVelocityBits() : stormm::chemistry::PhaseSpaceSynthesis, stormm::diskutil::PhaseSpaceSynthesis, stormm::energy::PhaseSpaceSynthesis, stormm::mm::PhaseSpaceSynthesis, stormm::review::PhaseSpaceSynthesis, stormm::stmath::PhaseSpaceSynthesis, stormm::structure::PhaseSpaceSynthesis, stormm::synthesis::PhaseSpaceSynthesis, stormm::testing::PhaseSpaceSynthesis, stormm::trajectory::PhaseSpaceSynthesis
• getVelocityScalingBits() : stormm::mm::PrecisionControls, stormm::namelist::PrecisionControls
• getVerbosity() : stormm::testing::TestEnvironment
• getVirtualSiteAffectors() : stormm::synthesis::ValenceDelegator
• getVirtualSiteCount() : stormm::card::AtomGraphSynthesis, stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraph, stormm::mm::AtomGraphSynthesis, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraph, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraph, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraph, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraph, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraph, stormm::trajectory::AtomGraphSynthesis
• getVirtualSiteFrameAtom() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getVirtualSiteFrameDimension() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getVirtualSiteFrameType() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::modeling::ForceFieldElement, stormm::namelist::AtomGraph, stormm::namelist::ForceFieldElement, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getVirtualSiteIndex() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getVirtualSiteInstruction() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getVirtualSiteInstructions() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• getVirtualSiteKernelDims() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• getVirtualSiteParameterSetCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getVolumeWithHalo() : stormm::synthesis::VolumePartition
• getWarmupCycleCount() : stormm::namelist::RandomControls
• getWarningFileName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• getWaterHeavyAtomSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getWaterLightAtomSize() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• getWaterResidueCount() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getWaterResidueName() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getWaterResidueSize() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• getWellDepth() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• getWidth() : stormm::review::SectionContents
• getWorkdayEnd() : stormm::namelist::NiceControls
• getWorkdayStart() : stormm::namelist::NiceControls
• getWorkUnitConfiguration() : stormm::energy::PMIGrid
• getWorkUnitCount() : stormm::energy::PMIGrid, stormm::mm::MotionSweeper, stormm::trajectory::MotionSweeper
• getWorkWeek() : stormm::namelist::NiceControls
• getZeroKelvinBondOrders() : stormm::chemistry::ChemicalFeatures, stormm::chemistry::IndigoTable, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getZeroKelvinFormalCharges() : stormm::chemistry::ChemicalFeatures, stormm::chemistry::IndigoTable, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• getZeroKelvinFreeElectrons() : stormm::chemistry::ChemicalFeatures, stormm::chemistry::IndigoTable, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• GpuDetails() : stormm::card::GpuDetails, stormm::energy::GpuDetails, stormm::mm::GpuDetails, stormm::random::GpuDetails, stormm::stmath::GpuDetails, stormm::structure::GpuDetails, stormm::synthesis::GpuDetails, stormm::testing::GpuDetails, stormm::trajectory::GpuDetails