Here is a list of all documented functions with links to the class documentation for each member:
- c -
- CacheResource() : stormm::energy::CacheResource, stormm::mm::CacheResource, stormm::structure::CacheResource, stormm::trajectory::CacheResource
- CacheResourceKit() : stormm::energy::CacheResourceKit< T >, stormm::structure::CacheResourceKit< T >, stormm::trajectory::CacheResourceKit< T >
- capacity() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
- categorizeKeyword() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
- CellGrid() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
- CellGridReader() : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
- CellGridWriter() : stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
- CellOriginsReader() : stormm::energy::CellOriginsReader
- CellOriginsWriter() : stormm::energy::CellOriginsWriter
- changeSection() : stormm::testing::CheckList
- CharmmValenceTable() : stormm::topology::CharmmValenceTable
- checkBondAngleRelevance() : stormm::topology::BasicValenceTable
- checkCompartments() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
- CheckList() : stormm::testing::CheckList
- checkPresence() : stormm::synthesis::ValenceDelegator
- ChemicalDetailsKit() : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::mm::ChemicalDetailsKit, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::synthesis::ChemicalDetailsKit, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit
- ChemicalFeatures() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
- ChemicalFeaturesReader() : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
- chiralitiesComputed() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
- choosePBRadiiSet() : stormm::namelist::SolventControls
- Citation() : stormm::parse::Citation, stormm::topology::Citation
- ClashReport() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
- clear() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
- clearComments() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
- ClusterManager() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
- ClusterManagerKit() : stormm::stmath::ClusterManagerKit< Tcalc >
- CmapAccessories() : stormm::synthesis::CmapAccessories, stormm::topology::CmapAccessories
- CmapSurfaceUnion() : stormm::topology::CmapSurfaceUnion
- colptr() : stormm::stmath::HpcMatrix< T >
- ComboGraphLJModel() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
- CommandLineParser() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
- commit() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- computeField() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
- computeNeighborLists() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
- computePotentialEnergy() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- computeTotalEnergy() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- Condensate() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
- CondensateBorders() : stormm::synthesis::CondensateBorders, stormm::trajectory::CondensateBorders
- CondensateReader() : stormm::chemistry::CondensateReader, stormm::structure::CondensateReader, stormm::synthesis::CondensateReader, stormm::trajectory::CondensateReader
- CondensateWriter() : stormm::structure::CondensateWriter, stormm::synthesis::CondensateWriter, stormm::trajectory::CondensateWriter
- CondensedExclusions() : stormm::topology::CondensedExclusions
- ConformerControls() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
- ConjGradSubstrate() : stormm::stmath::ConjGradSubstrate
- constrainGeometry() : stormm::energy::Thermostat, stormm::mm::DynamicsControls, stormm::mm::Thermostat, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::Thermostat
- ConstraintKit() : stormm::mm::ConstraintKit< T >, stormm::structure::ConstraintKit< T >, stormm::synthesis::ConstraintKit< T >, stormm::topology::ConstraintKit< T >, stormm::trajectory::ConstraintKit< T >
- ConstraintTable() : stormm::topology::ConstraintTable
- contribute() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
- contributeForces() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
- convertDefaultToString() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
- convertToReal() : stormm::energy::PMIGrid
- ConvolutionKit() : stormm::energy::ConvolutionKit< T >
- ConvolutionManager() : stormm::energy::ConvolutionManager
- CoordinateFrame() : stormm::chemistry::CoordinateFrame, stormm::diskutil::CoordinateFrame, stormm::energy::CoordinateFrame, stormm::mm::CoordinateFrame, stormm::namelist::CoordinateFrame, stormm::review::CoordinateFrame, stormm::stmath::CoordinateFrame, stormm::structure::CoordinateFrame, stormm::synthesis::CoordinateFrame, stormm::testing::CoordinateFrame, stormm::trajectory::CoordinateFrame
- CoordinateFrameReader() : stormm::chemistry::CoordinateFrameReader, stormm::diskutil::CoordinateFrameReader, stormm::energy::CoordinateFrameReader, stormm::mm::CoordinateFrameReader, stormm::namelist::CoordinateFrameReader, stormm::restraints::CoordinateFrameReader, stormm::review::CoordinateFrameReader, stormm::structure::CoordinateFrameReader, stormm::synthesis::CoordinateFrameReader, stormm::trajectory::CoordinateFrameReader
- CoordinateFrameWriter() : stormm::energy::CoordinateFrameWriter, stormm::structure::CoordinateFrameWriter, stormm::synthesis::CoordinateFrameWriter, stormm::trajectory::CoordinateFrameWriter
- CoordinateSeries() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
- CoordinateSeriesReader() : stormm::chemistry::CoordinateSeriesReader< T >, stormm::energy::CoordinateSeriesReader< T >, stormm::review::CoordinateSeriesReader< T >, stormm::structure::CoordinateSeriesReader< T >, stormm::synthesis::CoordinateSeriesReader< T >, stormm::trajectory::CoordinateSeriesReader< T >
- CoordinateSeriesWriter() : stormm::energy::CoordinateSeriesWriter< T >, stormm::structure::CoordinateSeriesWriter< T >, stormm::synthesis::CoordinateSeriesWriter< T >, stormm::testing::CoordinateSeriesWriter< T >, stormm::trajectory::CoordinateSeriesWriter< T >
- CoordinateSwapPlan() : stormm::trajectory::CoordinateSwapPlan
- coordinateWithPartner() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
- CoreKlManager() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
- coulombSetByUser() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
- CoupledEdit() : stormm::chemistry::CoupledEdit, stormm::synthesis::CoupledEdit
- CppScope() : stormm::docs::CppScope
- cullByPartners() : stormm::chemistry::IndigoAtomCenter
- cullHigherEnergyStatesByCharge() : stormm::chemistry::IndigoFragment
- cullStatesBearingCharge() : stormm::chemistry::IndigoFragment