Here is a list of all documented functions with links to the class documentation for each member:

- a -

• activateBool() : stormm::display::NamelistEmulator, stormm::namelist::NamelistElement, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• activateExitOnHelp() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• activateHelpOnNoArgs() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• add() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• addAnglParameters() : stormm::topology::AtomGraphStage
• addArray() : stormm::diskutil::BinaryFileKey
• addAtom() : stormm::topology::AtomGraphStage
• addAtoms() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask, stormm::topology::AtomGraphStage
• addAuthor() : stormm::parse::Citation, stormm::topology::Citation
• addAuthors() : stormm::parse::Citation, stormm::topology::Citation
• addBondOrder() : stormm::chemistry::BondedNode
• addBondParameters() : stormm::topology::AtomGraphStage
• addCategory() : stormm::chemistry::StopWatch, stormm::display::NamelistEmulator, stormm::mm::StopWatch, stormm::namelist::NamelistEmulator, stormm::synthesis::StopWatch, stormm::testing::NamelistEmulator, stormm::testing::StopWatch
• addCImpParameters() : stormm::topology::AtomGraphStage
• addClash() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• addCmapParameters() : stormm::topology::AtomGraphStage
• addCombination() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• addComment() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• addControlBlocks() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• addCustomNamelists() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• addDataItem() : stormm::namelist::ReportControls, stormm::review::ReportControls, stormm::structure::MdlMol, stormm::structure::ReportControls, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• addDataLine() : stormm::structure::MdlMolDataItem
• addDefaultValue() : stormm::display::NamelistEmulator, stormm::namelist::NamelistElement, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• addDiheParameters() : stormm::topology::AtomGraphStage
• addDoI() : stormm::parse::Citation, stormm::topology::Citation
• addEditor() : stormm::parse::Citation, stormm::topology::Citation
• addEditors() : stormm::parse::Citation, stormm::topology::Citation
• addEndPage() : stormm::parse::Citation, stormm::topology::Citation
• addEntry() : stormm::structure::MdlMolProperty
• addExclusions() : stormm::topology::Map1234
• addFreeCoordinateName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• addFreeTopologyName() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• addHelp() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• addInstance() : stormm::docs::ObjectIdentifier
• addIsosurface() : stormm::namelist::RenderOptions, stormm::review::RenderOptions
• addIssue() : stormm::parse::Citation, stormm::topology::Citation
• addItem() : stormm::review::OrderedList
• addItemAfter() : stormm::review::OrderedList
• addItemBefore() : stormm::review::OrderedList
• addJournal() : stormm::parse::Citation, stormm::topology::Citation
• addKeyword() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• addLineToDataItem() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• addList() : stormm::review::SectionContents
• addMovingAtoms() : stormm::chemistry::IsomerPlan, stormm::structure::IsomerPlan, stormm::synthesis::IsomerPlan
• addNarration() : stormm::review::SectionContents
• addNestedItem() : stormm::review::OrderedList
• addNewAtomImport() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• addNewAtomUpdate() : stormm::energy::ValenceWorkUnit, stormm::synthesis::ValenceWorkUnit
• addProperty() : stormm::structure::MdlMol, stormm::synthesis::MdlMol, stormm::testing::MdlMol, stormm::topology::MdlMol
• addPublisher() : stormm::parse::Citation, stormm::topology::Citation
• addRestraints() : stormm::energy::RestraintApparatus, stormm::mm::RestraintApparatus, stormm::restraints::RestraintApparatus, stormm::structure::RestraintApparatus, stormm::synthesis::RestraintApparatus
• addReturnType() : stormm::docs::ObjectIdentifier
• addScalar() : stormm::diskutil::BinaryFileKey
• addScript() : stormm::review::SectionContents
• addSet() : stormm::topology::CmapSurfaceUnion, stormm::topology::LennardJonesAnalysis, stormm::topology::ParameterUnion< T >
• addStandardAmberInputs() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• addStandardApplicationInputs() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• addStandardBenchmarkingInputs() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• addStartPage() : stormm::parse::Citation, stormm::topology::Citation
• addSystem() : stormm::namelist::FilesControls, stormm::review::FilesControls, stormm::synthesis::FilesControls, stormm::testing::FilesControls
• addSystemCache() : stormm::structure::RMSDPlan
• addTable() : stormm::review::SectionContents
• addTitle() : stormm::parse::Citation, stormm::topology::Citation
• addToTree() : stormm::chemistry::BondedNode
• addTuple2() : stormm::diskutil::BinaryFileKey
• addTuple3() : stormm::diskutil::BinaryFileKey
• addTuple4() : stormm::diskutil::BinaryFileKey
• addUbrdParameters() : stormm::topology::AtomGraphStage
• addVirtualSite() : stormm::topology::AtomGraphStage
• addVirtualSites() : stormm::topology::AtomGraphStage
• addVolume() : stormm::parse::Citation, stormm::topology::Citation
• addYear() : stormm::parse::Citation, stormm::topology::Citation
• advance() : stormm::review::TickCounter< T >, stormm::stmath::TickCounter< T >, stormm::synthesis::TickCounter< T >
• allocateBarContents() : stormm::reporting::ProgressBar
• apply() : stormm::modeling::ForceFieldElement, stormm::namelist::ForceFieldElement
• applyAndOperator() : stormm::chemistry::MaskComponent
• applyNotOperator() : stormm::chemistry::MaskComponent
• applyOrOperator() : stormm::chemistry::MaskComponent
• applyRangeOperator() : stormm::chemistry::MaskComponent
• applyStrategy() : stormm::mm::PPPMControls, stormm::namelist::PPPMControls
• applySynthesis() : stormm::synthesis::SynthesisPermutor
• applyToExclusions() : stormm::structure::MdlMolAtomList, stormm::structure::MdlMolProperty
• Approx() : stormm::chemistry::Approx, stormm::stmath::Approx, stormm::synthesis::Approx, stormm::testing::Approx, stormm::topology::Approx, stormm::trajectory::Approx
• assignElement() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• assignTime() : stormm::chemistry::StopWatch, stormm::mm::StopWatch, stormm::synthesis::StopWatch, stormm::testing::StopWatch
• assignVariable() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• atDevice() : stormm::stmath::HpcMatrix< T >
• atHost() : stormm::stmath::HpcMatrix< T >
• AtomEquivalence() : stormm::chemistry::AtomEquivalence, stormm::structure::AtomEquivalence
• AtomGraph() : stormm::chemistry::AtomGraph, stormm::data_types::AtomGraph, stormm::energy::AtomGraph, stormm::mm::AtomGraph, stormm::modeling::AtomGraph, stormm::namelist::AtomGraph, stormm::restraints::AtomGraph, stormm::review::AtomGraph, stormm::structure::AtomGraph, stormm::synthesis::AtomGraph, stormm::testing::AtomGraph, stormm::topology::AtomGraph, stormm::trajectory::AtomGraph
• AtomGraphStage() : stormm::topology::AtomGraphStage
• AtomGraphSynthesis() : stormm::card::AtomGraphSynthesis, stormm::energy::AtomGraphSynthesis, stormm::mm::AtomGraphSynthesis, stormm::review::AtomGraphSynthesis, stormm::stmath::AtomGraphSynthesis, stormm::structure::AtomGraphSynthesis, stormm::synthesis::AtomGraphSynthesis, stormm::testing::AtomGraphSynthesis, stormm::topology::AtomGraphSynthesis, stormm::trajectory::AtomGraphSynthesis
• AtomMask() : stormm::chemistry::AtomMask, stormm::namelist::AtomMask, stormm::restraints::AtomMask, stormm::structure::AtomMask
• AtomRank() : stormm::chemistry::AtomRank
• AttenuationParameterSet() : stormm::topology::AttenuationParameterSet