Here is a list of all documented class members with links to the class documentation for each member:

- c -

• cache : stormm::energy::ThermostatWriter< T >, stormm::mm::ThermostatReader< T >, stormm::mm::ThermostatWriter< T >, stormm::trajectory::ThermostatReader< T >, stormm::trajectory::ThermostatWriter< T >
• cache_origins : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• CacheResource() : stormm::energy::CacheResource, stormm::mm::CacheResource, stormm::structure::CacheResource, stormm::trajectory::CacheResource
• CacheResourceKit() : stormm::energy::CacheResourceKit< T >, stormm::structure::CacheResourceKit< T >, stormm::trajectory::CacheResourceKit< T >
• capacity() : stormm::card::Hybrid< T >, stormm::chemistry::Hybrid< T >, stormm::diskutil::Hybrid< T >, stormm::energy::Hybrid< T >, stormm::generalized_born_defaults::Hybrid< T >, stormm::mm::Hybrid< T >, stormm::numerics::Hybrid< T >, stormm::random::Hybrid< T >, stormm::restraints::Hybrid< T >, stormm::review::Hybrid< T >, stormm::stmath::Hybrid< T >, stormm::structure::Hybrid< T >, stormm::synthesis::Hybrid< T >, stormm::topology::Hybrid< T >, stormm::trajectory::Hybrid< T >
• categorizeKeyword() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• cbnd_acc : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cbnd_insr : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cdhe_acc : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cdhe_insr : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cdhe_ovrt_insr : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cell_base_capacity : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
• cell_limits : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
• cell_limits_alt : stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
• CellGrid() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• CellGridReader() : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
• CellGridWriter() : stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >
• CellOriginsReader() : stormm::energy::CellOriginsReader
• CellOriginsWriter() : stormm::energy::CellOriginsWriter
• centroid_dist : stormm::stmath::ClusterManagerKit< Tcalc >
• chain_limits : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
• chain_system_owner : stormm::energy::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::energy::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridReader< T, Tacc, Tcalc, T4 >, stormm::mm::CellGridWriter< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGridReader< T, Tacc, Tcalc, T4 >
• changeSection() : stormm::testing::CheckList
• charge : stormm::chemistry::NonbondedKit< T >, stormm::energy::NonbondedKit< T >, stormm::energy::SyNonbondedKit< T, T2 >, stormm::mm::NonbondedKit< T >, stormm::mm::SyNonbondedKit< T, T2 >, stormm::namelist::NonbondedKit< T >, stormm::restraints::NonbondedKit< T >, stormm::review::NonbondedKit< T >, stormm::structure::NonbondedKit< T >, stormm::structure::SyNonbondedKit< T, T2 >, stormm::synthesis::NonbondedKit< T >, stormm::synthesis::SyNonbondedKit< T, T2 >, stormm::topology::NonbondedKit< T >, stormm::trajectory::SyNonbondedKit< T, T2 >
• charges : stormm::energy::CacheResourceKit< T >, stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::CacheResourceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::CacheResourceKit< T >, stormm::trajectory::SyValenceKit< T >
• CharmmValenceTable() : stormm::topology::CharmmValenceTable
• checkBondAngleRelevance() : stormm::topology::BasicValenceTable
• checkCompartments() : stormm::energy::Thermostat, stormm::mm::Thermostat, stormm::trajectory::Thermostat
• CheckList() : stormm::testing::CheckList
• checkPresence() : stormm::synthesis::ValenceDelegator
• ChemicalDetailsKit() : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::mm::ChemicalDetailsKit, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::synthesis::ChemicalDetailsKit, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit
• ChemicalFeatures() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• ChemicalFeaturesReader() : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• chiral_arm_atoms : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• chiral_atoms : stormm::synthesis::SyPermutorKit< T >
• chiral_center_count : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• chiral_centers : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• chiral_inversion_methods : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• chiral_markers : stormm::synthesis::SyPermutorKit< T >
• chiral_protocols : stormm::synthesis::SyPermutorKit< T >
• chiral_settings : stormm::synthesis::SyPermutorKit< T >
• chiral_settings_bounds : stormm::synthesis::SyPermutorKit< T >
• chiralities_computed : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• chiralitiesComputed() : stormm::chemistry::ChemicalFeatures, stormm::namelist::ChemicalFeatures, stormm::restraints::ChemicalFeatures, stormm::structure::ChemicalFeatures, stormm::synthesis::ChemicalFeatures
• choosePBRadiiSet() : stormm::namelist::SolventControls
• cimp_asgn_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_asgn_bounds : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_asgn_index : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_asgn_terms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_i_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_j_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_k_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_keq : stormm::chemistry::ValenceKit< T >, stormm::energy::SyValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cimp_l_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_param_idx : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cimp_phi : stormm::chemistry::ValenceKit< T >, stormm::energy::SyValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cis_trans_bond_count : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• cis_trans_group_bounds : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• cis_trans_groups : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• Citation() : stormm::parse::Citation, stormm::topology::Citation
• clabel_bounds : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• clabel_proj : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• clash_distance : stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >
• clash_distance_f : stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >
• clash_ratio : stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >
• clash_ratio_f : stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >
• ClashReport() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• clear() : stormm::structure::ClashReport, stormm::synthesis::ClashReport
• clearComments() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• cls_bounds : stormm::stmath::ClusterManagerKit< Tcalc >
• cls_homes : stormm::stmath::ClusterManagerKit< Tcalc >
• cls_membership : stormm::stmath::ClusterManagerKit< Tcalc >
• cls_primes : stormm::stmath::ClusterManagerKit< Tcalc >
• cls_rmsd : stormm::stmath::ClusterManagerKit< Tcalc >
• ClusterManager() : stormm::stmath::ClusterManager< Tdata, Tcalc >, stormm::synthesis::ClusterManager< Tdata, Tcalc >
• ClusterManagerKit() : stormm::stmath::ClusterManagerKit< Tcalc >
• clusters : stormm::stmath::ClusterManagerKit< Tcalc >
• cmap_acc : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cmap_asgn_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_asgn_bounds : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_asgn_index : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_asgn_terms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_dim : stormm::chemistry::ValenceKit< T >, stormm::energy::SyValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cmap_dphi : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_dphi_dpsi : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_dpsi : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_i_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_insr : stormm::energy::SyValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cmap_j_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_k_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_l_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_m_atoms : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_patch_bounds : stormm::chemistry::ValenceKit< T >, stormm::energy::SyValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cmap_patches : stormm::chemistry::ValenceKit< T >, stormm::energy::SyValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::SyValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::SyValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::SyValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >, stormm::trajectory::SyValenceKit< T >
• cmap_surf : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_surf_bounds : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• cmap_surf_idx : stormm::chemistry::ValenceKit< T >, stormm::energy::ValenceKit< T >, stormm::mm::ValenceKit< T >, stormm::restraints::ValenceKit< T >, stormm::review::ValenceKit< T >, stormm::structure::ValenceKit< T >, stormm::synthesis::ValenceKit< T >, stormm::topology::ValenceKit< T >
• CmapAccessories() : stormm::synthesis::CmapAccessories, stormm::topology::CmapAccessories
• CmapSurfaceUnion() : stormm::topology::CmapSurfaceUnion
• cmesh_a : stormm::energy::ConvolutionKit< T >
• cmesh_b : stormm::energy::ConvolutionKit< T >
• cmesh_c : stormm::energy::ConvolutionKit< T >
• cnst_dof : stormm::chemistry::ChemicalDetailsKit, stormm::energy::ChemicalDetailsKit, stormm::energy::SyAtomUpdateKit< T, T2, T4 >, stormm::mm::ChemicalDetailsKit, stormm::mm::SyAtomUpdateKit< T, T2, T4 >, stormm::restraints::ChemicalDetailsKit, stormm::review::ChemicalDetailsKit, stormm::structure::ChemicalDetailsKit, stormm::structure::SyAtomUpdateKit< T, T2, T4 >, stormm::synthesis::ChemicalDetailsKit, stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >, stormm::topology::ChemicalDetailsKit, stormm::trajectory::ChemicalDetailsKit, stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
• cnst_geom : stormm::energy::ThermostatWriter< T >, stormm::mm::ThermostatReader< T >, stormm::mm::ThermostatWriter< T >, stormm::trajectory::ThermostatReader< T >, stormm::trajectory::ThermostatWriter< T >
• cnst_group_bounds : stormm::topology::ConstraintTable
• cnst_group_count : stormm::topology::ConstraintTable
• cnst_group_list : stormm::topology::ConstraintTable
• cnst_group_param_idx : stormm::topology::ConstraintTable
• cnst_grp_params : stormm::energy::SyAtomUpdateKit< T, T2, T4 >, stormm::mm::SyAtomUpdateKit< T, T2, T4 >, stormm::structure::SyAtomUpdateKit< T, T2, T4 >, stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >, stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
• cnst_insr : stormm::energy::SyAtomUpdateKit< T, T2, T4 >, stormm::mm::SyAtomUpdateKit< T, T2, T4 >, stormm::structure::SyAtomUpdateKit< T, T2, T4 >, stormm::synthesis::SyAtomUpdateKit< T, T2, T4 >, stormm::trajectory::SyAtomUpdateKit< T, T2, T4 >
• cnst_parameter_bounds : stormm::topology::ConstraintTable
• cnst_parameter_count : stormm::topology::ConstraintTable
• cnst_parameter_list : stormm::topology::ConstraintTable
• coeff_scale : stormm::review::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshWriter< Tdata >
• coeff_scale_f : stormm::review::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshWriter< Tdata >
• coeffs : stormm::review::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshReader< Tdata >, stormm::structure::BackgroundMeshWriter< Tdata >
• colptr() : stormm::stmath::HpcMatrix< T >
• com_scale : stormm::trajectory::MotionSweepReader, stormm::trajectory::MotionSweepWriter
• ComboGraphLJModel() : stormm::structure::ComboGraphLJModel, stormm::topology::ComboGraphLJModel
• CommandLineParser() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• commit() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• common_ag_bounds : stormm::chemistry::PsSynthesisReader, stormm::energy::PsSynthesisReader, stormm::energy::PsSynthesisWriter, stormm::mm::PsSynthesisReader, stormm::mm::PsSynthesisWriter, stormm::stmath::PsSynthesisWriter, stormm::structure::PsSynthesisReader, stormm::structure::PsSynthesisWriter, stormm::synthesis::PsSynthesisReader, stormm::synthesis::PsSynthesisWriter, stormm::testing::PsSynthesisWriter, stormm::trajectory::PsSynthesisReader, stormm::trajectory::PsSynthesisWriter
• common_ag_list : stormm::chemistry::PsSynthesisReader, stormm::energy::PsSynthesisReader, stormm::energy::PsSynthesisWriter, stormm::mm::PsSynthesisReader, stormm::mm::PsSynthesisWriter, stormm::stmath::PsSynthesisWriter, stormm::structure::PsSynthesisReader, stormm::structure::PsSynthesisWriter, stormm::synthesis::PsSynthesisReader, stormm::synthesis::PsSynthesisWriter, stormm::testing::PsSynthesisWriter, stormm::trajectory::PsSynthesisReader, stormm::trajectory::PsSynthesisWriter
• computeField() : stormm::review::BackgroundMesh< T >, stormm::structure::BackgroundMesh< T >
• computeNeighborLists() : stormm::review::MeshFoundation, stormm::structure::MeshFoundation
• computePotentialEnergy() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• computeTotalEnergy() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• Condensate() : stormm::chemistry::Condensate, stormm::stmath::Condensate, stormm::structure::Condensate, stormm::synthesis::Condensate, stormm::testing::Condensate, stormm::trajectory::Condensate
• CondensateBorders() : stormm::synthesis::CondensateBorders, stormm::trajectory::CondensateBorders
• CondensateReader() : stormm::chemistry::CondensateReader, stormm::structure::CondensateReader, stormm::synthesis::CondensateReader, stormm::trajectory::CondensateReader
• CondensateWriter() : stormm::structure::CondensateWriter, stormm::synthesis::CondensateWriter, stormm::trajectory::CondensateWriter
• CondensedExclusions() : stormm::topology::CondensedExclusions
• ConformerControls() : stormm::namelist::ConformerControls, stormm::synthesis::ConformerControls
• ConjGradSubstrate() : stormm::stmath::ConjGradSubstrate
• conjugated_group_count : stormm::chemistry::ChemicalFeaturesReader, stormm::structure::ChemicalFeaturesReader
• constrainGeometry() : stormm::energy::Thermostat, stormm::mm::DynamicsControls, stormm::mm::Thermostat, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls, stormm::trajectory::Thermostat
• ConstraintKit() : stormm::mm::ConstraintKit< T >, stormm::structure::ConstraintKit< T >, stormm::synthesis::ConstraintKit< T >, stormm::topology::ConstraintKit< T >, stormm::trajectory::ConstraintKit< T >
• ConstraintTable() : stormm::topology::ConstraintTable
• contribute() : stormm::energy::ScoreCard, stormm::mm::ScoreCard, stormm::review::ScoreCard, stormm::structure::ScoreCard, stormm::synthesis::ScoreCard
• contributeForces() : stormm::energy::CellGrid< T, Tacc, Tcalc, T4 >, stormm::mm::CellGrid< T, Tacc, Tcalc, T4 >, stormm::trajectory::CellGrid< T, Tacc, Tcalc, T4 >
• convertDefaultToString() : stormm::display::NamelistEmulator, stormm::namelist::NamelistEmulator, stormm::testing::NamelistEmulator
• convertToReal() : stormm::energy::PMIGrid
• ConvolutionKit() : stormm::energy::ConvolutionKit< T >
• ConvolutionManager() : stormm::energy::ConvolutionManager
• CoordinateFrame() : stormm::chemistry::CoordinateFrame, stormm::diskutil::CoordinateFrame, stormm::energy::CoordinateFrame, stormm::mm::CoordinateFrame, stormm::namelist::CoordinateFrame, stormm::review::CoordinateFrame, stormm::stmath::CoordinateFrame, stormm::structure::CoordinateFrame, stormm::synthesis::CoordinateFrame, stormm::testing::CoordinateFrame, stormm::trajectory::CoordinateFrame
• CoordinateFrameReader() : stormm::chemistry::CoordinateFrameReader, stormm::diskutil::CoordinateFrameReader, stormm::energy::CoordinateFrameReader, stormm::mm::CoordinateFrameReader, stormm::namelist::CoordinateFrameReader, stormm::restraints::CoordinateFrameReader, stormm::review::CoordinateFrameReader, stormm::structure::CoordinateFrameReader, stormm::synthesis::CoordinateFrameReader, stormm::trajectory::CoordinateFrameReader
• CoordinateFrameWriter() : stormm::energy::CoordinateFrameWriter, stormm::structure::CoordinateFrameWriter, stormm::synthesis::CoordinateFrameWriter, stormm::trajectory::CoordinateFrameWriter
• CoordinateSeries() : stormm::chemistry::CoordinateSeries< T >, stormm::diskutil::CoordinateSeries< T >, stormm::energy::CoordinateSeries< T >, stormm::review::CoordinateSeries< T >, stormm::stmath::CoordinateSeries< T >, stormm::structure::CoordinateSeries< T >, stormm::synthesis::CoordinateSeries< T >, stormm::testing::CoordinateSeries< T >, stormm::trajectory::CoordinateSeries< T >
• CoordinateSeriesReader() : stormm::chemistry::CoordinateSeriesReader< T >, stormm::energy::CoordinateSeriesReader< T >, stormm::review::CoordinateSeriesReader< T >, stormm::structure::CoordinateSeriesReader< T >, stormm::synthesis::CoordinateSeriesReader< T >, stormm::trajectory::CoordinateSeriesReader< T >
• CoordinateSeriesWriter() : stormm::energy::CoordinateSeriesWriter< T >, stormm::structure::CoordinateSeriesWriter< T >, stormm::synthesis::CoordinateSeriesWriter< T >, stormm::testing::CoordinateSeriesWriter< T >, stormm::trajectory::CoordinateSeriesWriter< T >
• CoordinateSwapPlan() : stormm::trajectory::CoordinateSwapPlan
• coordinateWithPartner() : stormm::namelist::CommandLineParser, stormm::testing::CommandLineParser
• core_atoms : stormm::structure::RMSDPlanReader< T >
• core_counts : stormm::structure::RMSDPlanReader< T >
• core_starts : stormm::structure::RMSDPlanReader< T >
• CoreKlManager() : stormm::card::CoreKlManager, stormm::energy::CoreKlManager, stormm::mm::CoreKlManager, stormm::stmath::CoreKlManager, stormm::structure::CoreKlManager, stormm::trajectory::CoreKlManager
• coulomb : stormm::energy::SyNonbondedKit< T, T2 >, stormm::energy::SyValenceKit< T >, stormm::mm::SyNonbondedKit< T, T2 >, stormm::mm::SyValenceKit< T >, stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >, stormm::structure::SyNonbondedKit< T, T2 >, stormm::structure::SyValenceKit< T >, stormm::synthesis::SyNonbondedKit< T, T2 >, stormm::synthesis::SyValenceKit< T >, stormm::trajectory::SyNonbondedKit< T, T2 >, stormm::trajectory::SyValenceKit< T >
• coulomb_constant : stormm::chemistry::NonbondedKit< T >, stormm::energy::NonbondedKit< T >, stormm::mm::NonbondedKit< T >, stormm::namelist::NonbondedKit< T >, stormm::restraints::NonbondedKit< T >, stormm::review::NonbondedKit< T >, stormm::structure::NonbondedKit< T >, stormm::synthesis::NonbondedKit< T >, stormm::topology::NonbondedKit< T >
• coulomb_f : stormm::review::MeshFFKit< T >, stormm::structure::MeshFFKit< T >
• coulombSetByUser() : stormm::mm::DynamicsControls, stormm::namelist::DynamicsControls, stormm::synthesis::DynamicsControls, stormm::testing::DynamicsControls, stormm::trajectory::DynamicsControls
• CoupledEdit() : stormm::chemistry::CoupledEdit, stormm::synthesis::CoupledEdit
• CppScope() : stormm::docs::CppScope
• csystem_bounds : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• csystem_proj : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• ctopol_bounds : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• ctopol_proj : stormm::review::SynthesisMapReader, stormm::structure::SynthesisMapReader, stormm::synthesis::SynthesisMapReader
• ctx_bond_markers : stormm::synthesis::SyPermutorKit< T >
• ctx_bond_settings : stormm::synthesis::SyPermutorKit< T >
• ctx_bond_settings_bounds : stormm::synthesis::SyPermutorKit< T >
• ctx_grp_atoms : stormm::synthesis::SyPermutorKit< T >
• ctx_grp_bounds : stormm::synthesis::SyPermutorKit< T >
• cullByPartners() : stormm::chemistry::IndigoAtomCenter
• cullHigherEnergyStatesByCharge() : stormm::chemistry::IndigoFragment
• cullStatesBearingCharge() : stormm::chemistry::IndigoFragment
• cvec_x : stormm::structure::MeshRulerKit
• cvec_x_ovrf : stormm::structure::MeshRulerKit
• cvec_y : stormm::structure::MeshRulerKit
• cvec_y_ovrf : stormm::structure::MeshRulerKit
• cvec_z : stormm::structure::MeshRulerKit
• cvec_z_ovrf : stormm::structure::MeshRulerKit
• cx : stormm::energy::CellOriginsReader, stormm::energy::CellOriginsWriter
• cx_ovrf : stormm::energy::CellOriginsReader, stormm::energy::CellOriginsWriter
• cy : stormm::energy::CellOriginsReader, stormm::energy::CellOriginsWriter
• cy_ovrf : stormm::energy::CellOriginsReader, stormm::energy::CellOriginsWriter
• cz : stormm::energy::CellOriginsReader, stormm::energy::CellOriginsWriter
• cz_ovrf : stormm::energy::CellOriginsReader, stormm::energy::CellOriginsWriter