STORMM Source Documentation
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Here is a list of all documented class members with links to the class documentation for each member:
- b -
BackgroundMesh() :
stormm::review::BackgroundMesh< T >
,
stormm::structure::BackgroundMesh< T >
BackgroundMeshComposition() :
stormm::structure::BackgroundMeshComposition< T >
BackgroundMeshReader() :
stormm::review::BackgroundMeshReader< Tdata >
,
stormm::structure::BackgroundMeshReader< Tdata >
BackgroundMeshWriter() :
stormm::structure::BackgroundMeshWriter< Tdata >
badInputResponse() :
stormm::namelist::NamelistElement
Barostat() :
stormm::trajectory::Barostat
BasicValenceTable() :
stormm::topology::BasicValenceTable
basis :
stormm::chemistry::CondensateReader
,
stormm::energy::LogSplineTable< T4 >
,
stormm::energy::PPIeKit< T >
,
stormm::energy::PPIKit< T, T4 >
,
stormm::stmath::LogSplineTable< T4 >
,
stormm::structure::CondensateReader
,
stormm::structure::CondensateWriter
,
stormm::synthesis::CondensateReader
,
stormm::synthesis::CondensateWriter
,
stormm::trajectory::CondensateReader
,
stormm::trajectory::CondensateWriter
BinaryFileContent() :
stormm::diskutil::BinaryFileContent
BinaryFileKey() :
stormm::diskutil::BinaryFileKey
bmesh_a :
stormm::energy::ConvolutionKit< T >
bmesh_b :
stormm::energy::ConvolutionKit< T >
bmesh_c :
stormm::energy::ConvolutionKit< T >
bond_asgn_atoms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
bond_asgn_bounds :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
bond_asgn_index :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
bond_asgn_terms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
bond_assigned_atoms :
stormm::topology::BasicValenceTable
bond_assigned_bounds :
stormm::topology::BasicValenceTable
bond_assigned_index :
stormm::topology::BasicValenceTable
bond_assigned_mods :
stormm::topology::BasicValenceTable
bond_assigned_terms :
stormm::topology::BasicValenceTable
bond_i_atoms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::BasicValenceTable
,
stormm::topology::ValenceKit< T >
bond_j_atoms :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::BasicValenceTable
,
stormm::topology::ValenceKit< T >
bond_keq :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
,
stormm::trajectory::SyValenceKit< T >
bond_leq :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::SyValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::SyValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::SyValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::SyValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
,
stormm::trajectory::SyValenceKit< T >
bond_modifiers :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::ValenceKit< T >
bond_mods :
stormm::topology::BasicValenceTable
bond_orders :
stormm::chemistry::ChemicalFeaturesReader
,
stormm::structure::ChemicalFeaturesReader
bond_param_idx :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::BasicValenceTable
,
stormm::topology::ValenceKit< T >
bond_relevance :
stormm::chemistry::ValenceKit< T >
,
stormm::energy::ValenceKit< T >
,
stormm::mm::ValenceKit< T >
,
stormm::restraints::ValenceKit< T >
,
stormm::review::ValenceKit< T >
,
stormm::structure::ValenceKit< T >
,
stormm::synthesis::ValenceKit< T >
,
stormm::topology::BasicValenceTable
,
stormm::topology::ValenceKit< T >
BondedNode() :
stormm::chemistry::BondedNode
bondIsInRing() :
stormm::chemistry::ChemicalFeatures
,
stormm::namelist::ChemicalFeatures
,
stormm::restraints::ChemicalFeatures
,
stormm::structure::ChemicalFeatures
,
stormm::synthesis::ChemicalFeatures
borders() :
stormm::chemistry::Condensate
,
stormm::chemistry::PhaseSpaceSynthesis
,
stormm::diskutil::PhaseSpaceSynthesis
,
stormm::energy::PhaseSpaceSynthesis
,
stormm::mm::PhaseSpaceSynthesis
,
stormm::review::PhaseSpaceSynthesis
,
stormm::stmath::Condensate
,
stormm::stmath::PhaseSpaceSynthesis
,
stormm::structure::Condensate
,
stormm::structure::PhaseSpaceSynthesis
,
stormm::synthesis::Condensate
,
stormm::synthesis::PhaseSpaceSynthesis
,
stormm::testing::Condensate
,
stormm::testing::PhaseSpaceSynthesis
,
stormm::trajectory::Condensate
,
stormm::trajectory::PhaseSpaceSynthesis
BoundedRestraint() :
stormm::namelist::BoundedRestraint
,
stormm::restraints::BoundedRestraint
bounds :
stormm::review::MeshParamKit
,
stormm::structure::MeshParamKit
boxdim :
stormm::chemistry::CoordinateFrameReader
,
stormm::chemistry::CoordinateSeriesReader< T >
,
stormm::chemistry::PhaseSpaceReader
,
stormm::diskutil::CoordinateFrameReader
,
stormm::energy::CoordinateFrameReader
,
stormm::energy::CoordinateFrameWriter
,
stormm::energy::CoordinateSeriesReader< T >
,
stormm::energy::CoordinateSeriesWriter< T >
,
stormm::energy::PhaseSpaceReader
,
stormm::energy::PhaseSpaceWriter
,
stormm::mm::CoordinateFrameReader
,
stormm::mm::PhaseSpaceReader
,
stormm::mm::PhaseSpaceWriter
,
stormm::namelist::CoordinateFrameReader
,
stormm::restraints::CoordinateFrameReader
,
stormm::review::CoordinateFrameReader
,
stormm::review::CoordinateSeriesReader< T >
,
stormm::structure::CoordinateFrameReader
,
stormm::structure::CoordinateFrameWriter
,
stormm::structure::CoordinateSeriesReader< T >
,
stormm::structure::CoordinateSeriesWriter< T >
,
stormm::structure::PhaseSpaceReader
,
stormm::structure::PhaseSpaceWriter
,
stormm::synthesis::CoordinateFrameReader
,
stormm::synthesis::CoordinateFrameWriter
,
stormm::synthesis::CoordinateSeriesReader< T >
,
stormm::synthesis::CoordinateSeriesWriter< T >
,
stormm::synthesis::PhaseSpaceReader
,
stormm::synthesis::PhaseSpaceWriter
,
stormm::testing::CoordinateSeriesWriter< T >
,
stormm::trajectory::CoordinateFrameReader
,
stormm::trajectory::CoordinateFrameWriter
,
stormm::trajectory::CoordinateSeriesReader< T >
,
stormm::trajectory::CoordinateSeriesWriter< T >
,
stormm::trajectory::PhaseSpaceReader
,
stormm::trajectory::PhaseSpaceWriter
boxdim_alt :
stormm::chemistry::PhaseSpaceReader
,
stormm::energy::PhaseSpaceReader
,
stormm::energy::PhaseSpaceWriter
,
stormm::mm::PhaseSpaceReader
,
stormm::mm::PhaseSpaceWriter
,
stormm::structure::PhaseSpaceReader
,
stormm::structure::PhaseSpaceWriter
,
stormm::synthesis::PhaseSpaceReader
,
stormm::synthesis::PhaseSpaceWriter
,
stormm::trajectory::PhaseSpaceReader
,
stormm::trajectory::PhaseSpaceWriter
boxdims :
stormm::chemistry::CondensateReader
,
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::CondensateReader
,
stormm::structure::CondensateWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::CondensateReader
,
stormm::synthesis::CondensateWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::CondensateReader
,
stormm::trajectory::CondensateWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
boxvec_ovrf :
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
boxvecs :
stormm::chemistry::PsSynthesisReader
,
stormm::energy::PsSynthesisReader
,
stormm::energy::PsSynthesisWriter
,
stormm::mm::PsSynthesisReader
,
stormm::mm::PsSynthesisWriter
,
stormm::stmath::PsSynthesisWriter
,
stormm::structure::PsSynthesisReader
,
stormm::structure::PsSynthesisWriter
,
stormm::synthesis::PsSynthesisReader
,
stormm::synthesis::PsSynthesisWriter
,
stormm::testing::PsSynthesisWriter
,
stormm::trajectory::PsSynthesisReader
,
stormm::trajectory::PsSynthesisWriter
Brickwork() :
stormm::energy::Brickwork
,
stormm::synthesis::Brickwork
buildFromFile() :
stormm::chemistry::CoordinateFrame
,
stormm::chemistry::PhaseSpace
,
stormm::diskutil::CoordinateFrame
,
stormm::diskutil::PhaseSpace
,
stormm::energy::CoordinateFrame
,
stormm::energy::PhaseSpace
,
stormm::mm::CoordinateFrame
,
stormm::mm::PhaseSpace
,
stormm::namelist::CoordinateFrame
,
stormm::namelist::PhaseSpace
,
stormm::review::CoordinateFrame
,
stormm::stmath::CoordinateFrame
,
stormm::stmath::PhaseSpace
,
stormm::structure::CoordinateFrame
,
stormm::structure::PhaseSpace
,
stormm::synthesis::CoordinateFrame
,
stormm::synthesis::PhaseSpace
,
stormm::testing::CoordinateFrame
,
stormm::testing::PhaseSpace
,
stormm::trajectory::CoordinateFrame
,
stormm::trajectory::PhaseSpace
buildFromPrmtop() :
stormm::chemistry::AtomGraph
,
stormm::data_types::AtomGraph
,
stormm::energy::AtomGraph
,
stormm::mm::AtomGraph
,
stormm::modeling::AtomGraph
,
stormm::namelist::AtomGraph
,
stormm::restraints::AtomGraph
,
stormm::review::AtomGraph
,
stormm::structure::AtomGraph
,
stormm::synthesis::AtomGraph
,
stormm::testing::AtomGraph
,
stormm::topology::AtomGraph
,
stormm::trajectory::AtomGraph
buildSynthesis() :
stormm::synthesis::SynthesisPermutor
bvec_x :
stormm::structure::MeshRulerKit
bvec_x_ovrf :
stormm::structure::MeshRulerKit
bvec_y :
stormm::structure::MeshRulerKit
bvec_y_ovrf :
stormm::structure::MeshRulerKit
bvec_z :
stormm::structure::MeshRulerKit
bvec_z_ovrf :
stormm::structure::MeshRulerKit
bx :
stormm::energy::CellOriginsReader
,
stormm::energy::CellOriginsWriter
bx_ovrf :
stormm::energy::CellOriginsReader
,
stormm::energy::CellOriginsWriter
by :
stormm::energy::CellOriginsReader
,
stormm::energy::CellOriginsWriter
by_ovrf :
stormm::energy::CellOriginsReader
,
stormm::energy::CellOriginsWriter
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