stormm::testing::MdlMol Member List
This is the complete list of members for stormm::testing::MdlMol, including all inherited members.
| addDataItem(const MdlMolDataRequest &ask, const AtomGraph &ag, const RestraintApparatus &ra) | stormm::testing::MdlMol | |
| addLineToDataItem(const std::string &text, int item_index) | stormm::testing::MdlMol | |
| addProperty(const MdlMolProperty *mmprop) | stormm::testing::MdlMol | |
| addProperty(const MdlMolProperty &mmprop) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| exportCoordinateFrame() const | stormm::testing::MdlMol | |
| exportPhaseSpace() const | stormm::testing::MdlMol | |
| getAtomCount() const | stormm::testing::MdlMol | |
| getAtomicNumber(int index) const | stormm::testing::MdlMol | |
| getAtomicNumbers() const | stormm::testing::MdlMol | |
| getAtomSymbol(int index) const | stormm::testing::MdlMol | |
| getAtomSymbols() const | stormm::testing::MdlMol | |
| getBondCount() const | stormm::testing::MdlMol | |
| getCoordinates(int index) const | stormm::testing::MdlMol | |
| getCoordinates() const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| getCoordinates(CartesianDimension dim) const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| getDataItemContent(int item_index) const | stormm::testing::MdlMol | |
| getDataItemContent(const std::string &item_name) const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| getDataItemCount() const | stormm::testing::MdlMol | |
| getDataItemIndex(const std::string &item_name) const | stormm::testing::MdlMol | |
| getDataItemKind(int item_index) const | stormm::testing::MdlMol | |
| getDataItemName(int item_index) const | stormm::testing::MdlMol | |
| getDataItemOutputName(int item_index) const | stormm::testing::MdlMol | |
| getFormalCharge(int index) const | stormm::testing::MdlMol | |
| getFormalCharges() const | stormm::testing::MdlMol | |
| getPropertiesCount() const | stormm::testing::MdlMol | |
| getSelfPointer() const | stormm::testing::MdlMol | |
| getTitle() const | stormm::testing::MdlMol | |
| getTrackedState(int item_index) const | stormm::testing::MdlMol | |
| impartCoordinates(const T *xcrd, const T *ycrd, const T *zcrd, double scale_factor) | stormm::testing::MdlMol | |
| impartCoordinates(const T *xcrd, const T *ycrd, const T *zcrd, double scale_factor, const ChemicalDetailsKit &cdk, int molecule_index) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const llint *xcrd, const llint *ycrd, const llint *zcrd, const int *xcrd_ovrf, const int *ycrd_ovrf, const int *zcrd_ovrf, double scale_factor) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const llint *xcrd, const llint *ycrd, const llint *zcrd, const int *xcrd_ovrf, const int *ycrd_ovrf, const int *zcrd_ovrf, double scale_factor, const ChemicalDetailsKit &cdk, int molecule_index) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpaceReader &psr) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpaceWriter &psw) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpace *ps, CoordinateCycle orientation, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpace *ps, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpace &ps, CoordinateCycle orientation, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpace &ps, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateFrameReader &cfr) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateFrameWriter &cfw) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateFrame *cf, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateFrame &cf, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateSeriesReader< T > &cs, int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateSeriesWriter< T > &cs, int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateSeries< T > *cs, int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const CoordinateSeries< T > &cs, int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpaceSynthesis *poly_ps, int system_index, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| impartCoordinates(const PhaseSpaceSynthesis &poly_ps, int system_index, HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(ExceptionResponse policy_in=ExceptionResponse::WARN) | stormm::testing::MdlMol | |
| MdlMol(const std::string &filename, ExceptionResponse policy_in=ExceptionResponse::WARN, ModificationPolicy dimod_policy=ModificationPolicy::DO_NOT_MODIFY, ExceptionResponse dimod_notify=ExceptionResponse::WARN) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const char *filename, ExceptionResponse policy_in=ExceptionResponse::WARN, ModificationPolicy dimod_policy=ModificationPolicy::DO_NOT_MODIFY, ExceptionResponse dimod_notify=ExceptionResponse::WARN) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const TextFile &tf, int line_start=0, int line_end=-1, CaseSensitivity capitalization=CaseSensitivity::YES, ExceptionResponse policy_in=ExceptionResponse::WARN, ModificationPolicy dimod_policy=ModificationPolicy::DO_NOT_MODIFY, ExceptionResponse dimod_notify=ExceptionResponse::WARN) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const T *xcrd, const T *ycrd, const T *zcrd, double inv_scale, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const T *xcrd, const T *ycrd, const T *zcrd, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const CoordinateFrameReader cfr, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const CoordinateFrame *cf, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures &chemfe, const CoordinateFrame &cf, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const PhaseSpaceReader psr, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const PhaseSpace *ps, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures &chemfe, const PhaseSpace &ps, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const CoordinateSeriesReader< T > csr, int frame_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const CoordinateSeries< T > *cs, int frame_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures &chemfe, const CoordinateSeries< T > &cs, int frame_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const PsSynthesisReader poly_psr, int system_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const PhaseSpaceSynthesis *poly_ps, int system_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures &chemfe, const PhaseSpaceSynthesis &poly_ps, int system_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const CondensateReader *cdnsr, int system_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures *chemfe, const Condensate *cdns, int system_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const ChemicalFeatures &chemfe, const Condensate &cdns, int system_index, int molecule_index=0) (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| MdlMol(const MdlMol &original)=default | stormm::testing::MdlMol | |
| MdlMol(MdlMol &&original)=default (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| operator=(const MdlMol &original)=default (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| operator=(MdlMol &&original)=default (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| writeDataItems(std::ofstream *foutp, int mol_index=0) const | stormm::testing::MdlMol | |
| writeDataItems(const std::string &fname, PrintSituation expectation, int mol_index=0) const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| writeDataItems(int mol_index=0) const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| writeMdl(std::ofstream *foutp, MdlMolVersion vformat) const | stormm::testing::MdlMol | |
| writeMdl(const std::string &fname, MdlMolVersion vformat, PrintSituation expectation) const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol | |
| writeMdl(MdlMolVersion vformat=MdlMolVersion::V3000) const (defined in stormm::testing::MdlMol) | stormm::testing::MdlMol |
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