| addFreeCoordinateName(const std::string &file_name) | stormm::synthesis::FilesControls | |
| addFreeTopologyName(const std::string &file_name) | stormm::synthesis::FilesControls | |
| addSystem(const MoleculeSystem &new_mol) | stormm::synthesis::FilesControls | |
| FilesControls(ExceptionResponse policy_in=ExceptionResponse::DIE, WrapTextSearch wrap=WrapTextSearch::NO) | stormm::synthesis::FilesControls | |
| FilesControls(const TextFile &tf, int *start_line, bool *found_nml=nullptr, ExceptionResponse policy_in=ExceptionResponse::DIE, WrapTextSearch wrap=WrapTextSearch::NO, const std::vector< std::string > &alternatives={}, const std::vector< std::string > &sys_requirements={"-pe", "-ce"}) (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| FilesControls(const FilesControls &original)=default | stormm::synthesis::FilesControls | |
| FilesControls(FilesControls &&original)=default (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| getCheckpointFileName() const | stormm::synthesis::FilesControls | |
| getCheckpointFormat() const | stormm::synthesis::FilesControls | |
| getFileFusionProtocol() const | stormm::synthesis::FilesControls | |
| getFreeCoordinateName(int index) const | stormm::synthesis::FilesControls | |
| getFreeCoordinateNames() const (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| getFreeCoordinatesCount() const | stormm::synthesis::FilesControls | |
| getFreeTopologyCount() const | stormm::synthesis::FilesControls | |
| getFreeTopologyName(int index) const | stormm::synthesis::FilesControls | |
| getFreeTopologyNames() const (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| getInputTranscriptFile() const | stormm::synthesis::FilesControls | |
| getOutputCoordinateFormat() const | stormm::synthesis::FilesControls | |
| getReportFile() const | stormm::synthesis::FilesControls | |
| getSdfModificationPolicy() const | stormm::synthesis::FilesControls | |
| getSdfNotifications() const | stormm::synthesis::FilesControls | |
| getStructureCount() const | stormm::synthesis::FilesControls | |
| getSystem(int index) const | stormm::synthesis::FilesControls | |
| getSystemDefinitionCount() const | stormm::synthesis::FilesControls | |
| getTrajectoryFileName() const | stormm::synthesis::FilesControls | |
| getTranscript() const | stormm::synthesis::FilesControls | |
| getWarningFileName() const | stormm::synthesis::FilesControls | |
| operator=(const FilesControls &original)=default (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| operator=(FilesControls &&original)=default (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| readAllFreeFrames() const | stormm::synthesis::FilesControls | |
| removeFreeCoordinateName(int index, int stretch=1) | stormm::synthesis::FilesControls | |
| removeFreeCoordinateName(const std::string &fname) (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| removeFreeTopologyName(int index, int stretch=1) | stormm::synthesis::FilesControls | |
| removeFreeTopologyName(const std::string &fname) (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| removeSystem(int index, int stretch=1) | stormm::synthesis::FilesControls | |
| setAllFreeFrameReading(const bool active) | stormm::synthesis::FilesControls | |
| setCheckpointFormat(const std::string &chk_kind) | stormm::synthesis::FilesControls | |
| setCheckpointFormat(CoordinateFileKind chk_kind) (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| setGeneralCheckpointFileName(const std::string &proto_name) | stormm::synthesis::FilesControls | |
| setGeneralTrajectoryFileName(const std::string &proto_name) | stormm::synthesis::FilesControls | |
| setInputTranscriptFileName(const std::string &file_name) | stormm::synthesis::FilesControls | |
| setOutputCoordinateFormat(const std::string &traj_kind) | stormm::synthesis::FilesControls | |
| setOutputCoordinateFormat(CoordinateFileKind traj_kind) (defined in stormm::synthesis::FilesControls) | stormm::synthesis::FilesControls | |
| setReportFileName(const std::string &file_name) | stormm::synthesis::FilesControls | |
| setSdfModficiationPolicy(ModificationPolicy policy_in) | stormm::synthesis::FilesControls | |
| setSdfNotifications(ExceptionResponse policy_in) | stormm::synthesis::FilesControls | |
| setWarningFileName(const std::string &file_name) | stormm::synthesis::FilesControls | |
1.13.2