STORMM Source Documentation
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This is the complete list of members for stormm::structure::BackgroundMesh< T >, including all inherited members.
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const MeshParameters &measurements_in=MeshParameters(), const PrecisionModel build_precision_in=PrecisionModel::SINGLE) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const MeshParameters &measurements_in=MeshParameters(), const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const MeshParameters &measurements_in=MeshParameters(), const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph *ag_in, const CoordinateFrame *cf_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateFrame &cf_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const MeshParameters &measurements_in=MeshParameters(), int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, double probe_radius_in, double well_depth_in, VdwCombiningRule mixing_protocol_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}, double clash_distance_in=default_mesh_elec_damping_range, double clash_ratio_in=default_mesh_vdw_damping_ratio, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, NonbondedPotential field_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, double clash_distance_in=default_mesh_elec_damping_range, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double buffer, double spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, double buffer, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(GridDetail kind_in, double probe_radius_in, const AtomGraph &ag_in, const CoordinateSeries< Tcoord > &cs_in, const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=default_globalpos_scale_bits, int averaging_order=default_mesh_density_averaging_order, const std::vector< double > &probe_sigma={}, PrecisionModel prec=PrecisionModel::SINGLE, const MeshKlManager &launcher=MeshKlManager(), HybridTargetLevel availability=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(const BackgroundMesh< T > &original)=default | stormm::structure::BackgroundMesh< T > | |
BackgroundMesh(BackgroundMesh< T > &&original)=default (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
computeField(const MeshKlManager &launcher=MeshKlManager(), PrecisionModel prec=PrecisionModel::SINGLE, HybridTargetLevel availability=HybridTargetLevel::HOST, const std::vector< double > &probe_sigma={}, const std::vector< double > &probe_epsilon={}) | stormm::structure::BackgroundMesh< T > | |
data(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::structure::BackgroundMesh< T > | |
data(HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
getBuildPrecision() const | stormm::structure::BackgroundMesh< T > | |
getClashDistance() const | stormm::structure::BackgroundMesh< T > | |
getClashRatio() const | stormm::structure::BackgroundMesh< T > | |
getCoefficientScalingBits() const | stormm::structure::BackgroundMesh< T > | |
getCoefficientScalingFactor() const | stormm::structure::BackgroundMesh< T > | |
getCombiningRule() const | stormm::structure::BackgroundMesh< T > | |
getCoordinatePointer() const | stormm::structure::BackgroundMesh< T > | |
getDimensions() const | stormm::structure::BackgroundMesh< T > | |
getEnsemblePointer() const | stormm::structure::BackgroundMesh< T > | |
getEnsembleTypeCode() const | stormm::structure::BackgroundMesh< T > | |
getMeshKind() const | stormm::structure::BackgroundMesh< T > | |
getMolecularBasis() const | stormm::structure::BackgroundMesh< T > | |
getMolecularBasis() (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
getNonbondedKit(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::structure::BackgroundMesh< T > | |
getNonbondedPotential() const | stormm::structure::BackgroundMesh< T > | |
getOcclusionPenalty() const | stormm::structure::BackgroundMesh< T > | |
getProbeRadius() const | stormm::structure::BackgroundMesh< T > | |
getReferenceNonbondedKit(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::structure::BackgroundMesh< T > | |
getTopologyPointer() const | stormm::structure::BackgroundMesh< T > | |
getWellDepth() const | stormm::structure::BackgroundMesh< T > | |
operator=(const BackgroundMesh< T > &original)=default (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
operator=(BackgroundMesh< T > &&original)=default (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
setCoefficientScalingBits(int scaling_bits_in) | stormm::structure::BackgroundMesh< T > | |
setMeshParameters(const AtomGraph *ag_in, const CoordinateFrame *cf_in, double padding, double spacing, int scale_bits_in=-100) | stormm::structure::BackgroundMesh< T > | |
setMeshParameters(const AtomGraph *ag_in, const CoordinateFrame *cf_in, double padding, const std::vector< double > &spacing, int scale_bits_in=-100) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
setMeshParameters(double padding, double spacing, int scale_bits_in=-100) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
setMeshParameters(double padding, const std::vector< double > &spacing, int scale_bits_in=-100) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
setMeshParameters(const std::vector< double > &mesh_bounds, double spacing, int scale_bits_in=-100) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
setMeshParameters(const std::vector< double > &mesh_bounds, const std::vector< double > &spacing, int scale_bits_in=-100) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
setOcclusionPenalty(double occlusion_penalty_in) | stormm::structure::BackgroundMesh< T > | |
setProbeRadius(double probe_radius_in) | stormm::structure::BackgroundMesh< T > | |
setWellDepth(double well_depth_in) | stormm::structure::BackgroundMesh< T > | |
templateFreeData(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::structure::BackgroundMesh< T > | |
templateFreeData(HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::structure::BackgroundMesh< T >) | stormm::structure::BackgroundMesh< T > | |
templateFreeNonbondedKit(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::structure::BackgroundMesh< T > | |
validateCombiningRule(VdwCombiningRule mixing_protocol_in, const std::vector< double > &probe_sigma, const std::vector< double > &probe_epsilon) | stormm::structure::BackgroundMesh< T > |