STORMM Source Documentation
|
This is the complete list of members for stormm::structure::AtomMask, including all inherited members.
addAtoms(const std::vector< int > &new_indices, ExceptionResponse policy=ExceptionResponse::DIE) | stormm::structure::AtomMask | |
addAtoms(const std::vector< char4 > &new_names) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
addAtoms(const AtomMask &new_mask, const CoordinateFrame &cf, const ChemicalFeatures &chemfe) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
addAtoms(const std::string &new_mask, const CoordinateFrame &cf, const ChemicalFeatures &chemfe) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
addAtoms(const AtomMask &new_mask, const CoordinateFrame &cf) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
addAtoms(const std::string &new_mask, const CoordinateFrame &cf) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
AtomMask(const AtomGraph *ag_in=nullptr) | stormm::structure::AtomMask | |
AtomMask(const std::string &input_text_in, const AtomGraph *ag_in, const ChemicalFeatures &chemfe, const CoordinateFrameReader &cfr, MaskInputMode mode=MaskInputMode::AMBMASK, const std::string &description_in=std::string("No description provided")) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
AtomMask(const std::string &input_text_in, const AtomGraph *ag_in, const ChemicalFeatures &chemfe, const CoordinateFrame &cf, MaskInputMode mode=MaskInputMode::AMBMASK, const std::string &description_in=std::string("No description provided")) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
AtomMask(const std::string &input_text_in, const AtomGraph *ag_in, const ChemicalFeatures &chemfe, const PhaseSpace &ps, MaskInputMode mode=MaskInputMode::AMBMASK, const std::string &description_in=std::string("No description provided")) (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
AtomMask(const AtomMask &original)=default | stormm::structure::AtomMask | |
AtomMask(AtomMask &&original)=default (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
getDescription() const | stormm::structure::AtomMask | |
getInputKind() const | stormm::structure::AtomMask | |
getInputText() const | stormm::structure::AtomMask | |
getMask() const | stormm::structure::AtomMask | |
getMaskedAtomCount() const | stormm::structure::AtomMask | |
getMaskedAtomList() const (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
getRawMask() const | stormm::structure::AtomMask | |
getRecommendation() const | stormm::structure::AtomMask | |
getSegments() const | stormm::structure::AtomMask | |
getTopologyPointer() const | stormm::structure::AtomMask | |
isAtomInMask(const char4 atom_name) const | stormm::structure::AtomMask | |
isAtomInMask(const char4 res_name, const char4 atom_name) const (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask | |
isAtomInMask(int atom_index) const (defined in stormm::structure::AtomMask) | stormm::structure::AtomMask |