stormm::chemistry::CoordinateSeries< T > Member List
This is the complete list of members for stormm::chemistry::CoordinateSeries< T >, including all inherited members.
| CoordinateSeries(int natom_in=0, int nframe_in=0, UnitCellType unit_cell_in=UnitCellType::NONE, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(const std::string &file_name, int atom_count_in=0, CoordinateFileKind file_kind=CoordinateFileKind::UNKNOWN, const std::vector< int > &frame_numbers={}, int replica_count=1, UnitCellType unit_cell_in=UnitCellType::NONE, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(PhaseSpace *ps, int nframe_in, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(const PhaseSpace &ps, int nframe_in, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(CoordinateFrame *cf, int nframe_in, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(const CoordinateFrame &cf, int nframe_in, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(const CoordinateSeries &original)=default | stormm::chemistry::CoordinateSeries< T > | |
| CoordinateSeries(CoordinateSeries &&original)=default (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| CoordinateSeries(const CoordinateSeries &original, HybridFormat format_in) | stormm::chemistry::CoordinateSeries< T > | explicit |
| CoordinateSeries(const CoordinateSeries< Toriginal > &original, int globalpos_scale_bits_in=0, HybridFormat format_in=default_hpc_format) | stormm::chemistry::CoordinateSeries< T > | |
| data(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| data(HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| exportFrame(size_t frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| exportPhaseSpace(size_t frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| exportToFile(const std::string &file_name, CoordinateFileKind output_kind=CoordinateFileKind::AMBER_CRD, PrintSituation expectation=PrintSituation::UNKNOWN, int low_index=0, int high_index=0, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(CoordinateFrame *cf, size_t frame_index, const GpuDetails &gpu) const | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(PhaseSpace *ps, size_t frame_index, TrajectoryKind kind, CoordinateCycle time_point, const GpuDetails &gpu) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(PhaseSpace *ps, size_t frame_index, TrajectoryKind kind, const GpuDetails &gpu) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(PhaseSpace *ps, size_t frame_index, const GpuDetails &gpu) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(CoordinateFrame *cf, size_t frame_index, HybridTargetLevel tier) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(PhaseSpace *ps, size_t frame_index, TrajectoryKind kind, CoordinateCycle time_point, HybridTargetLevel tier) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(PhaseSpace *ps, size_t frame_index, TrajectoryKind kind, HybridTargetLevel tier) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| extractFrame(PhaseSpace *ps, size_t frame_index, HybridTargetLevel tier) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getAtomCount() const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxDimensionPointer() const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxDimensions(int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxDimensions() const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getBoxDimensionsHandle() const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxDimensionsHandle() (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getBoxSpaceTransform(int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxTransformPointer() const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxTransforms() const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxTransformsHandle() const | stormm::chemistry::CoordinateSeries< T > | |
| getBoxTransformsHandle() (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getCoordinatePointer(CartesianDimension dim) const | stormm::chemistry::CoordinateSeries< T > | |
| getCoordinateReference(CartesianDimension dim) const | stormm::chemistry::CoordinateSeries< T > | |
| getFixedPrecisionBits() const | stormm::chemistry::CoordinateSeries< T > | |
| getFormat() const | stormm::chemistry::CoordinateSeries< T > | |
| getFrameCapacity() const | stormm::chemistry::CoordinateSeries< T > | |
| getFrameCount() const | stormm::chemistry::CoordinateSeries< T > | |
| getFramesHandle(CartesianDimension dim) const | stormm::chemistry::CoordinateSeries< T > | |
| getFramesHandle(CartesianDimension dim) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getInterlacedCoordinates(int frame_index, int globalpos_bits_out=-1, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| getInterlacedCoordinates(int frame_index, int low_index, int high_index, int globalpos_bits_out=-1, HybridTargetLevel tier=HybridTargetLevel::HOST) const (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getInverseTransform(int frame_index, HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| getInverseTransformPointer() const | stormm::chemistry::CoordinateSeries< T > | |
| getInverseTransforms() const | stormm::chemistry::CoordinateSeries< T > | |
| getInverseTransformsHandle() const | stormm::chemistry::CoordinateSeries< T > | |
| getInverseTransformsHandle() (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| getSelfPointer() const | stormm::chemistry::CoordinateSeries< T > | |
| getUnitCellType() const | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrameReader &cfr, int atom_start, int atom_end, int frame_index=-1) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrameReader &cfr, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrameWriter &cfw, int atom_start, int atom_end, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrameWriter &cfw, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrame &cf, int atom_start, int atom_end, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrame &cf, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrame *cf, int atom_start, int atom_end, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const CoordinateFrame *cf, int frame_index=-1) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const PhaseSpace &ps, int atom_start, int atom_end, int frame_index=-1, TrajectoryKind kind=TrajectoryKind::POSITIONS, CoordinateCycle orientation=CoordinateCycle::WHITE) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const PhaseSpace &ps, int frame_index=-1, TrajectoryKind kind=TrajectoryKind::POSITIONS, CoordinateCycle orientation=CoordinateCycle::WHITE) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const PhaseSpace *ps, int atom_start, int atom_end, int frame_index=-1, TrajectoryKind kind=TrajectoryKind::POSITIONS, CoordinateCycle orientation=CoordinateCycle::WHITE) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFrame(const PhaseSpace *ps, int frame_index=-1, TrajectoryKind kind=TrajectoryKind::POSITIONS, CoordinateCycle orientation=CoordinateCycle::WHITE) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| importFromFile(const std::string &file_name, CoordinateFileKind file_kind=CoordinateFileKind::UNKNOWN, const std::vector< int > &frame_numbers={}, int replica_count=1, int frame_index_start=-1) | stormm::chemistry::CoordinateSeries< T > | |
| operator=(const CoordinateSeries &other)=default (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| operator=(CoordinateSeries &&other)=default (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| pushBack(const CoordinateFrameReader &cfr, int atom_start=0, int atom_end=0) | stormm::chemistry::CoordinateSeries< T > | |
| pushBack(const CoordinateFrameWriter &cfw, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| pushBack(const CoordinateFrame &cf, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| pushBack(CoordinateFrame *cf, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| pushBack(const PhaseSpace &ps, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| pushBack(PhaseSpace *ps, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| reserve(const int new_frame_capacity) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count, const CoordinateFrameReader &cfr, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count, const CoordinateFrameWriter &cfw, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count, const CoordinateFrame &cf, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count, CoordinateFrame *cf, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count, const PhaseSpace &ps, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| resize(int new_frame_count, PhaseSpace *ps, int atom_start=0, int atom_end=0) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > | |
| shrinkToFit() | stormm::chemistry::CoordinateSeries< T > | |
| templateFreeData(HybridTargetLevel tier=HybridTargetLevel::HOST) const | stormm::chemistry::CoordinateSeries< T > | |
| templateFreeData(HybridTargetLevel tier=HybridTargetLevel::HOST) (defined in stormm::chemistry::CoordinateSeries< T >) | stormm::chemistry::CoordinateSeries< T > |
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