addBondOrder(const ValenceKit< double > &vk, const Hybrid< double > &bond_orders) | stormm::chemistry::BondedNode | |
addToTree(int previous_in, int current_atom, int current_layer, const NonbondedKit< double > &nbk, const std::vector< bool > &valid_atom_mask) | stormm::chemistry::BondedNode | |
addToTree(int previous_in, int current_atom, int current_layer, int previous_node_in, const NonbondedKit< double > &nbk, const std::vector< bool > &valid_atom_mask) (defined in stormm::chemistry::BondedNode) | stormm::chemistry::BondedNode | |
BondedNode() | stormm::chemistry::BondedNode | |
findBranchAtom(int search_index) const | stormm::chemistry::BondedNode | |
getAtom() const | stormm::chemistry::BondedNode | |
getBranchAtom(int index) const | stormm::chemistry::BondedNode | |
getBranchCount() const | stormm::chemistry::BondedNode | |
getLayer() const | stormm::chemistry::BondedNode | |
getPreviousAtom() const | stormm::chemistry::BondedNode | |
getPreviousNode() const | stormm::chemistry::BondedNode | |
getRingCompletion(int branch_index) const | stormm::chemistry::BondedNode | |
getRootBondOrder() const | stormm::chemistry::BondedNode | |
setBranchPointer(std::vector< int > *vi, size_t pos, size_t max_branches) | stormm::chemistry::BondedNode | |
setRingCompletion(int partner_index) | stormm::chemistry::BondedNode | |
wipeRingCompletion() | stormm::chemistry::BondedNode | |