STORMM Source Documentation
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stormm::chemistry::AtomMask Member List

This is the complete list of members for stormm::chemistry::AtomMask, including all inherited members.

addAtoms(const std::vector< int > &new_indices, ExceptionResponse policy=ExceptionResponse::DIE)stormm::chemistry::AtomMask
addAtoms(const std::vector< char4 > &new_names) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
addAtoms(const AtomMask &new_mask, const CoordinateFrame &cf, const ChemicalFeatures &chemfe) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
addAtoms(const std::string &new_mask, const CoordinateFrame &cf, const ChemicalFeatures &chemfe) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
addAtoms(const AtomMask &new_mask, const CoordinateFrame &cf) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
addAtoms(const std::string &new_mask, const CoordinateFrame &cf) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
AtomMask(const AtomGraph *ag_in=nullptr)stormm::chemistry::AtomMask
AtomMask(const std::string &input_text_in, const AtomGraph *ag_in, const ChemicalFeatures &chemfe, const CoordinateFrameReader &cfr, MaskInputMode mode=MaskInputMode::AMBMASK, const std::string &description_in=std::string("No description provided")) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
AtomMask(const std::string &input_text_in, const AtomGraph *ag_in, const ChemicalFeatures &chemfe, const CoordinateFrame &cf, MaskInputMode mode=MaskInputMode::AMBMASK, const std::string &description_in=std::string("No description provided")) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
AtomMask(const std::string &input_text_in, const AtomGraph *ag_in, const ChemicalFeatures &chemfe, const PhaseSpace &ps, MaskInputMode mode=MaskInputMode::AMBMASK, const std::string &description_in=std::string("No description provided")) (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
AtomMask(const AtomMask &original)=defaultstormm::chemistry::AtomMask
AtomMask(AtomMask &&original)=default (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
getDescription() conststormm::chemistry::AtomMask
getInputKind() conststormm::chemistry::AtomMask
getInputText() conststormm::chemistry::AtomMask
getMask() conststormm::chemistry::AtomMask
getMaskedAtomCount() conststormm::chemistry::AtomMask
getMaskedAtomList() const (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
getRawMask() conststormm::chemistry::AtomMask
getRecommendation() conststormm::chemistry::AtomMask
getSegments() conststormm::chemistry::AtomMask
getTopologyPointer() conststormm::chemistry::AtomMask
isAtomInMask(const char4 atom_name) conststormm::chemistry::AtomMask
isAtomInMask(const char4 res_name, const char4 atom_name) const (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask
isAtomInMask(int atom_index) const (defined in stormm::chemistry::AtomMask)stormm::chemistry::AtomMask